Results 1 - 20 of 48 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30001 | 5' | -64.9 | NC_006273.1 | + | 222411 | 0.66 | 0.622798 |
Target: 5'- aCGUagUUCGUGaUGGCgUgUAGAGGCCCg -3' miRNA: 3'- cGCG--AGGCAC-GCCGgGgGUCUCCGGG- -5' |
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30001 | 5' | -64.9 | NC_006273.1 | + | 200847 | 0.66 | 0.650811 |
Target: 5'- cGCGCUUCGagGCGuGCCCUU-GccGCCCg -3' miRNA: 3'- -CGCGAGGCa-CGC-CGGGGGuCucCGGG- -5' |
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30001 | 5' | -64.9 | NC_006273.1 | + | 30662 | 0.66 | 0.641477 |
Target: 5'- aCGCgCCGgGCGGCUUCCuGcGGCCg -3' miRNA: 3'- cGCGaGGCaCGCCGGGGGuCuCCGGg -5' |
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30001 | 5' | -64.9 | NC_006273.1 | + | 34113 | 0.66 | 0.621864 |
Target: 5'- cGCGC-CCGUcGCcgcacucgcaaaaGGCCgCgUAGAGGUCCu -3' miRNA: 3'- -CGCGaGGCA-CG-------------CCGG-GgGUCUCCGGG- -5' |
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30001 | 5' | -64.9 | NC_006273.1 | + | 204705 | 0.66 | 0.660132 |
Target: 5'- gGUGUcgCCG-GCGaGCCCCgAGGcGcGCCCg -3' miRNA: 3'- -CGCGa-GGCaCGC-CGGGGgUCU-C-CGGG- -5' |
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30001 | 5' | -64.9 | NC_006273.1 | + | 185275 | 0.66 | 0.641477 |
Target: 5'- cUGCUCCGUGUgucGGCCgCUCAaacgucGGGCCg -3' miRNA: 3'- cGCGAGGCACG---CCGG-GGGUc-----UCCGGg -5' |
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30001 | 5' | -64.9 | NC_006273.1 | + | 193350 | 0.66 | 0.641477 |
Target: 5'- aCGUaaaCCGgGCGcCUCCCGGAGGCUCu -3' miRNA: 3'- cGCGa--GGCaCGCcGGGGGUCUCCGGG- -5' |
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30001 | 5' | -64.9 | NC_006273.1 | + | 56103 | 0.67 | 0.593908 |
Target: 5'- aUGCUCUG-GCGGCgCCgCCGGAuuucgucgaaacgGGCCg -3' miRNA: 3'- cGCGAGGCaCGCCG-GG-GGUCU-------------CCGGg -5' |
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30001 | 5' | -64.9 | NC_006273.1 | + | 195170 | 0.67 | 0.576301 |
Target: 5'- cGCGggUUGUGCaGUgugCCCCGG-GGCCCg -3' miRNA: 3'- -CGCgaGGCACGcCG---GGGGUCuCCGGG- -5' |
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30001 | 5' | -64.9 | NC_006273.1 | + | 148666 | 0.67 | 0.56708 |
Target: 5'- gGUGCUCUcgugGUGCGGCCugCCCGacaucguGGGCCg -3' miRNA: 3'- -CGCGAGG----CACGCCGG--GGGUc------UCCGGg -5' |
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30001 | 5' | -64.9 | NC_006273.1 | + | 45004 | 0.67 | 0.561566 |
Target: 5'- uCGUUcCCGUcccucuccucccuccGCGGCCCCCAcggcGGcGGCCUg -3' miRNA: 3'- cGCGA-GGCA---------------CGCCGGGGGU----CU-CCGGG- -5' |
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30001 | 5' | -64.9 | NC_006273.1 | + | 48839 | 0.67 | 0.546935 |
Target: 5'- -aGCUCC-UGCGGCCacaggugcguagCCAGGGGCg- -3' miRNA: 3'- cgCGAGGcACGCCGGg-----------GGUCUCCGgg -5' |
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30001 | 5' | -64.9 | NC_006273.1 | + | 141129 | 0.67 | 0.548757 |
Target: 5'- gGCGCagCGUGCGGaCCgCAGcacGGCCg -3' miRNA: 3'- -CGCGagGCACGCCgGGgGUCu--CCGGg -5' |
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30001 | 5' | -64.9 | NC_006273.1 | + | 202159 | 0.67 | 0.604142 |
Target: 5'- cCGCcCCG-G-GGCCCUCGGugcgcuaccGGGCCCa -3' miRNA: 3'- cGCGaGGCaCgCCGGGGGUC---------UCCGGG- -5' |
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30001 | 5' | -64.9 | NC_006273.1 | + | 277 | 0.67 | 0.576301 |
Target: 5'- cGCGggUUGUGCaGUgugCCCCGG-GGCCCg -3' miRNA: 3'- -CGCgaGGCACGcCG---GGGGUCuCCGGG- -5' |
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30001 | 5' | -64.9 | NC_006273.1 | + | 235108 | 0.67 | 0.576301 |
Target: 5'- cGCGggUUGUGCaGUgugCCCCGG-GGCCCg -3' miRNA: 3'- -CGCgaGGCACGcCG---GGGGUCuCCGGG- -5' |
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30001 | 5' | -64.9 | NC_006273.1 | + | 169570 | 0.67 | 0.585555 |
Target: 5'- uGCGCcgCCGauUGCGGaCCgCAGGGGCg- -3' miRNA: 3'- -CGCGa-GGC--ACGCCgGGgGUCUCCGgg -5' |
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30001 | 5' | -64.9 | NC_006273.1 | + | 197480 | 0.67 | 0.576301 |
Target: 5'- cCGCUCacaacgCGUGCGaGaCCUgCGcGAGGCCCg -3' miRNA: 3'- cGCGAG------GCACGC-C-GGGgGU-CUCCGGG- -5' |
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30001 | 5' | -64.9 | NC_006273.1 | + | 119473 | 0.67 | 0.548757 |
Target: 5'- cGCGCUuuGUGCaGCgCCaCAccGGCCUg -3' miRNA: 3'- -CGCGAggCACGcCGgGG-GUcuCCGGG- -5' |
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30001 | 5' | -64.9 | NC_006273.1 | + | 105318 | 0.67 | 0.594837 |
Target: 5'- aGCGUUCCu--CGGUUCCC-GAGGCgCCa -3' miRNA: 3'- -CGCGAGGcacGCCGGGGGuCUCCG-GG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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