miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30001 5' -64.9 NC_006273.1 + 23672 1.13 0.000467
Target:  5'- cGCGCUCCGUGCGGCCCCCAGAGGCCCg -3'
miRNA:   3'- -CGCGAGGCACGCCGGGGGUCUCCGGG- -5'
30001 5' -64.9 NC_006273.1 + 141283 0.78 0.122936
Target:  5'- cGCGCUCCcuagGUGCGGCCgCCCAGuGGaaaaauaCCg -3'
miRNA:   3'- -CGCGAGG----CACGCCGG-GGGUCuCCg------GG- -5'
30001 5' -64.9 NC_006273.1 + 36757 0.74 0.239086
Target:  5'- cGgGCUCCGgcggGUGGCCUgagcacgCC-GAGGCCCa -3'
miRNA:   3'- -CgCGAGGCa---CGCCGGG-------GGuCUCCGGG- -5'
30001 5' -64.9 NC_006273.1 + 29208 0.73 0.261558
Target:  5'- cGUGCUCCGaucggGCGGUCgaCUGGAGGCUCu -3'
miRNA:   3'- -CGCGAGGCa----CGCCGGg-GGUCUCCGGG- -5'
30001 5' -64.9 NC_006273.1 + 185472 0.73 0.27313
Target:  5'- -aGCUCCGUucgcGCaGCgCCCuGGGGCCCu -3'
miRNA:   3'- cgCGAGGCA----CGcCGgGGGuCUCCGGG- -5'
30001 5' -64.9 NC_006273.1 + 154233 0.73 0.27313
Target:  5'- cCGCUUCGUGCGGCCgCCCAGc--UCCa -3'
miRNA:   3'- cGCGAGGCACGCCGG-GGGUCuccGGG- -5'
30001 5' -64.9 NC_006273.1 + 156694 0.73 0.279068
Target:  5'- cGCGcCUCCGgcgGCGGUgCCCgCGGAccccGGCCCc -3'
miRNA:   3'- -CGC-GAGGCa--CGCCG-GGG-GUCU----CCGGG- -5'
30001 5' -64.9 NC_006273.1 + 75704 0.73 0.291253
Target:  5'- cGCGCcCCGUGCGGCgCUCAGcacGCUCa -3'
miRNA:   3'- -CGCGaGGCACGCCGgGGGUCuc-CGGG- -5'
30001 5' -64.9 NC_006273.1 + 216389 0.72 0.301934
Target:  5'- cGCGCccgugggcaguaggUCCGUGCGGCCCC---AGGCgCu -3'
miRNA:   3'- -CGCG--------------AGGCACGCCGGGGgucUCCGgG- -5'
30001 5' -64.9 NC_006273.1 + 68375 0.72 0.308357
Target:  5'- aGCGCcUCGUGCggcaacgcuuuccaGGCCCUCaAGAGuGCCCu -3'
miRNA:   3'- -CGCGaGGCACG--------------CCGGGGG-UCUC-CGGG- -5'
30001 5' -64.9 NC_006273.1 + 57702 0.72 0.330289
Target:  5'- aGCGCcagcgUCG-GCGGCUCCgAGAGGCgCg -3'
miRNA:   3'- -CGCGa----GGCaCGCCGGGGgUCUCCGgG- -5'
30001 5' -64.9 NC_006273.1 + 167699 0.71 0.337157
Target:  5'- aGCaGCUCgaGUGUGGCCUCCAGuGGUUg -3'
miRNA:   3'- -CG-CGAGg-CACGCCGGGGGUCuCCGGg -5'
30001 5' -64.9 NC_006273.1 + 39422 0.71 0.34413
Target:  5'- gGCGC-CCG-GCGGCCCgCGGGGuucuaCCCg -3'
miRNA:   3'- -CGCGaGGCaCGCCGGGgGUCUCc----GGG- -5'
30001 5' -64.9 NC_006273.1 + 234315 0.71 0.34413
Target:  5'- gGCGC-CCG-GCGGCCCgCGGGGuucuaCCCg -3'
miRNA:   3'- -CGCGaGGCaCGCCGGGgGUCUCc----GGG- -5'
30001 5' -64.9 NC_006273.1 + 205210 0.71 0.351206
Target:  5'- aGCGUggUGUGCgacgGGCCCCCGGGcucGCCCa -3'
miRNA:   3'- -CGCGagGCACG----CCGGGGGUCUc--CGGG- -5'
30001 5' -64.9 NC_006273.1 + 56406 0.71 0.351206
Target:  5'- cCGCgCCGUGCGcacGUUCCCAGGcacgcGGCCCa -3'
miRNA:   3'- cGCGaGGCACGC---CGGGGGUCU-----CCGGG- -5'
30001 5' -64.9 NC_006273.1 + 30143 0.71 0.361284
Target:  5'- uCGCUCaUGUGaCGcGCCgagucagugggcgagCCCGGGGGCCCg -3'
miRNA:   3'- cGCGAG-GCAC-GC-CGG---------------GGGUCUCCGGG- -5'
30001 5' -64.9 NC_006273.1 + 99348 0.7 0.411443
Target:  5'- cCGCUCgGaacGCGGCCCgCGGAucGGCCa -3'
miRNA:   3'- cGCGAGgCa--CGCCGGGgGUCU--CCGGg -5'
30001 5' -64.9 NC_006273.1 + 163839 0.7 0.419412
Target:  5'- uCGCaagucgCCGgcaGCGGCCgCCGGcgaGGGCCCu -3'
miRNA:   3'- cGCGa-----GGCa--CGCCGGgGGUC---UCCGGG- -5'
30001 5' -64.9 NC_006273.1 + 73546 0.69 0.435626
Target:  5'- aCGaCUCaCGUGCu-CCUCCAGAGGCCg -3'
miRNA:   3'- cGC-GAG-GCACGccGGGGGUCUCCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.