miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30001 5' -64.9 NC_006273.1 + 277 0.67 0.576301
Target:  5'- cGCGggUUGUGCaGUgugCCCCGG-GGCCCg -3'
miRNA:   3'- -CGCgaGGCACGcCG---GGGGUCuCCGGG- -5'
30001 5' -64.9 NC_006273.1 + 23672 1.13 0.000467
Target:  5'- cGCGCUCCGUGCGGCCCCCAGAGGCCCg -3'
miRNA:   3'- -CGCGAGGCACGCCGGGGGUCUCCGGG- -5'
30001 5' -64.9 NC_006273.1 + 29208 0.73 0.261558
Target:  5'- cGUGCUCCGaucggGCGGUCgaCUGGAGGCUCu -3'
miRNA:   3'- -CGCGAGGCa----CGCCGGg-GGUCUCCGGG- -5'
30001 5' -64.9 NC_006273.1 + 30143 0.71 0.361284
Target:  5'- uCGCUCaUGUGaCGcGCCgagucagugggcgagCCCGGGGGCCCg -3'
miRNA:   3'- cGCGAG-GCAC-GC-CGG---------------GGGUCUCCGGG- -5'
30001 5' -64.9 NC_006273.1 + 30662 0.66 0.641477
Target:  5'- aCGCgCCGgGCGGCUUCCuGcGGCCg -3'
miRNA:   3'- cGCGaGGCaCGCCGGGGGuCuCCGGg -5'
30001 5' -64.9 NC_006273.1 + 34113 0.66 0.621864
Target:  5'- cGCGC-CCGUcGCcgcacucgcaaaaGGCCgCgUAGAGGUCCu -3'
miRNA:   3'- -CGCGaGGCA-CG-------------CCGG-GgGUCUCCGGG- -5'
30001 5' -64.9 NC_006273.1 + 36757 0.74 0.239086
Target:  5'- cGgGCUCCGgcggGUGGCCUgagcacgCC-GAGGCCCa -3'
miRNA:   3'- -CgCGAGGCa---CGCCGGG-------GGuCUCCGGG- -5'
30001 5' -64.9 NC_006273.1 + 39422 0.71 0.34413
Target:  5'- gGCGC-CCG-GCGGCCCgCGGGGuucuaCCCg -3'
miRNA:   3'- -CGCGaGGCaCGCCGGGgGUCUCc----GGG- -5'
30001 5' -64.9 NC_006273.1 + 45004 0.67 0.561566
Target:  5'- uCGUUcCCGUcccucuccucccuccGCGGCCCCCAcggcGGcGGCCUg -3'
miRNA:   3'- cGCGA-GGCA---------------CGCCGGGGGU----CU-CCGGG- -5'
30001 5' -64.9 NC_006273.1 + 48839 0.67 0.546935
Target:  5'- -aGCUCC-UGCGGCCacaggugcguagCCAGGGGCg- -3'
miRNA:   3'- cgCGAGGcACGCCGGg-----------GGUCUCCGgg -5'
30001 5' -64.9 NC_006273.1 + 56103 0.67 0.593908
Target:  5'- aUGCUCUG-GCGGCgCCgCCGGAuuucgucgaaacgGGCCg -3'
miRNA:   3'- cGCGAGGCaCGCCG-GG-GGUCU-------------CCGGg -5'
30001 5' -64.9 NC_006273.1 + 56406 0.71 0.351206
Target:  5'- cCGCgCCGUGCGcacGUUCCCAGGcacgcGGCCCa -3'
miRNA:   3'- cGCGaGGCACGC---CGGGGGUCU-----CCGGG- -5'
30001 5' -64.9 NC_006273.1 + 57702 0.72 0.330289
Target:  5'- aGCGCcagcgUCG-GCGGCUCCgAGAGGCgCg -3'
miRNA:   3'- -CGCGa----GGCaCGCCGGGGgUCUCCGgG- -5'
30001 5' -64.9 NC_006273.1 + 64857 0.68 0.530623
Target:  5'- cGCGCUCUc-GCGGCCUUCAacGGCaCCa -3'
miRNA:   3'- -CGCGAGGcaCGCCGGGGGUcuCCG-GG- -5'
30001 5' -64.9 NC_006273.1 + 68375 0.72 0.308357
Target:  5'- aGCGCcUCGUGCggcaacgcuuuccaGGCCCUCaAGAGuGCCCu -3'
miRNA:   3'- -CGCGaGGCACG--------------CCGGGGG-UCUC-CGGG- -5'
30001 5' -64.9 NC_006273.1 + 73546 0.69 0.435626
Target:  5'- aCGaCUCaCGUGCu-CCUCCAGAGGCCg -3'
miRNA:   3'- cGC-GAG-GCACGccGGGGGUCUCCGGg -5'
30001 5' -64.9 NC_006273.1 + 75704 0.73 0.291253
Target:  5'- cGCGCcCCGUGCGGCgCUCAGcacGCUCa -3'
miRNA:   3'- -CGCGaGGCACGCCGgGGGUCuc-CGGG- -5'
30001 5' -64.9 NC_006273.1 + 76044 0.68 0.495054
Target:  5'- aGCGCcgCCGUGCcuCCUCCAGAGGaCg -3'
miRNA:   3'- -CGCGa-GGCACGccGGGGGUCUCCgGg -5'
30001 5' -64.9 NC_006273.1 + 94393 0.69 0.483726
Target:  5'- cGgGCaCCGggcGCGGCCCgcuccggaccucggCCGGGGGUCCc -3'
miRNA:   3'- -CgCGaGGCa--CGCCGGG--------------GGUCUCCGGG- -5'
30001 5' -64.9 NC_006273.1 + 99348 0.7 0.411443
Target:  5'- cCGCUCgGaacGCGGCCCgCGGAucGGCCa -3'
miRNA:   3'- cGCGAGgCa--CGCCGGGgGUCU--CCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.