Results 1 - 20 of 48 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30001 | 5' | -64.9 | NC_006273.1 | + | 34113 | 0.66 | 0.621864 |
Target: 5'- cGCGC-CCGUcGCcgcacucgcaaaaGGCCgCgUAGAGGUCCu -3' miRNA: 3'- -CGCGaGGCA-CG-------------CCGG-GgGUCUCCGGG- -5' |
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30001 | 5' | -64.9 | NC_006273.1 | + | 94393 | 0.69 | 0.483726 |
Target: 5'- cGgGCaCCGggcGCGGCCCgcuccggaccucggCCGGGGGUCCc -3' miRNA: 3'- -CgCGaGGCa--CGCCGGG--------------GGUCUCCGGG- -5' |
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30001 | 5' | -64.9 | NC_006273.1 | + | 221782 | 0.68 | 0.530623 |
Target: 5'- gGCGUggg--GCGGCCCuCCAGcacggcGGCCCg -3' miRNA: 3'- -CGCGaggcaCGCCGGG-GGUCu-----CCGGG- -5' |
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30001 | 5' | -64.9 | NC_006273.1 | + | 64857 | 0.68 | 0.530623 |
Target: 5'- cGCGCUCUc-GCGGCCUUCAacGGCaCCa -3' miRNA: 3'- -CGCGAGGcaCGCCGGGGGUcuCCG-GG- -5' |
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30001 | 5' | -64.9 | NC_006273.1 | + | 48839 | 0.67 | 0.546935 |
Target: 5'- -aGCUCC-UGCGGCCacaggugcguagCCAGGGGCg- -3' miRNA: 3'- cgCGAGGcACGCCGGg-----------GGUCUCCGgg -5' |
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30001 | 5' | -64.9 | NC_006273.1 | + | 45004 | 0.67 | 0.561566 |
Target: 5'- uCGUUcCCGUcccucuccucccuccGCGGCCCCCAcggcGGcGGCCUg -3' miRNA: 3'- cGCGA-GGCA---------------CGCCGGGGGU----CU-CCGGG- -5' |
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30001 | 5' | -64.9 | NC_006273.1 | + | 148666 | 0.67 | 0.56708 |
Target: 5'- gGUGCUCUcgugGUGCGGCCugCCCGacaucguGGGCCg -3' miRNA: 3'- -CGCGAGG----CACGCCGG--GGGUc------UCCGGg -5' |
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30001 | 5' | -64.9 | NC_006273.1 | + | 195170 | 0.67 | 0.576301 |
Target: 5'- cGCGggUUGUGCaGUgugCCCCGG-GGCCCg -3' miRNA: 3'- -CGCgaGGCACGcCG---GGGGUCuCCGGG- -5' |
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30001 | 5' | -64.9 | NC_006273.1 | + | 56103 | 0.67 | 0.593908 |
Target: 5'- aUGCUCUG-GCGGCgCCgCCGGAuuucgucgaaacgGGCCg -3' miRNA: 3'- cGCGAGGCaCGCCG-GG-GGUCU-------------CCGGg -5' |
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30001 | 5' | -64.9 | NC_006273.1 | + | 204362 | 0.69 | 0.475097 |
Target: 5'- cGCGCUCCGcucguuaccccaggUGCcguaGGCUCUCGG-GGCCg -3' miRNA: 3'- -CGCGAGGC--------------ACG----CCGGGGGUCuCCGGg -5' |
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30001 | 5' | -64.9 | NC_006273.1 | + | 73546 | 0.69 | 0.435626 |
Target: 5'- aCGaCUCaCGUGCu-CCUCCAGAGGCCg -3' miRNA: 3'- cGC-GAG-GCACGccGGGGGUCUCCGGg -5' |
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30001 | 5' | -64.9 | NC_006273.1 | + | 163839 | 0.7 | 0.419412 |
Target: 5'- uCGCaagucgCCGgcaGCGGCCgCCGGcgaGGGCCCu -3' miRNA: 3'- cGCGa-----GGCa--CGCCGGgGGUC---UCCGGG- -5' |
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30001 | 5' | -64.9 | NC_006273.1 | + | 154233 | 0.73 | 0.27313 |
Target: 5'- cCGCUUCGUGCGGCCgCCCAGc--UCCa -3' miRNA: 3'- cGCGAGGCACGCCGG-GGGUCuccGGG- -5' |
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30001 | 5' | -64.9 | NC_006273.1 | + | 156694 | 0.73 | 0.279068 |
Target: 5'- cGCGcCUCCGgcgGCGGUgCCCgCGGAccccGGCCCc -3' miRNA: 3'- -CGC-GAGGCa--CGCCG-GGG-GUCU----CCGGG- -5' |
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30001 | 5' | -64.9 | NC_006273.1 | + | 75704 | 0.73 | 0.291253 |
Target: 5'- cGCGCcCCGUGCGGCgCUCAGcacGCUCa -3' miRNA: 3'- -CGCGaGGCACGCCGgGGGUCuc-CGGG- -5' |
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30001 | 5' | -64.9 | NC_006273.1 | + | 216389 | 0.72 | 0.301934 |
Target: 5'- cGCGCccgugggcaguaggUCCGUGCGGCCCC---AGGCgCu -3' miRNA: 3'- -CGCG--------------AGGCACGCCGGGGgucUCCGgG- -5' |
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30001 | 5' | -64.9 | NC_006273.1 | + | 57702 | 0.72 | 0.330289 |
Target: 5'- aGCGCcagcgUCG-GCGGCUCCgAGAGGCgCg -3' miRNA: 3'- -CGCGa----GGCaCGCCGGGGgUCUCCGgG- -5' |
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30001 | 5' | -64.9 | NC_006273.1 | + | 234315 | 0.71 | 0.34413 |
Target: 5'- gGCGC-CCG-GCGGCCCgCGGGGuucuaCCCg -3' miRNA: 3'- -CGCGaGGCaCGCCGGGgGUCUCc----GGG- -5' |
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30001 | 5' | -64.9 | NC_006273.1 | + | 56406 | 0.71 | 0.351206 |
Target: 5'- cCGCgCCGUGCGcacGUUCCCAGGcacgcGGCCCa -3' miRNA: 3'- cGCGaGGCACGC---CGGGGGUCU-----CCGGG- -5' |
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30001 | 5' | -64.9 | NC_006273.1 | + | 30143 | 0.71 | 0.361284 |
Target: 5'- uCGCUCaUGUGaCGcGCCgagucagugggcgagCCCGGGGGCCCg -3' miRNA: 3'- cGCGAG-GCAC-GC-CGG---------------GGGUCUCCGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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