miRNA display CGI


Results 1 - 20 of 272 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30013 3' -59.2 NC_006273.1 + 74565 0.66 0.901608
Target:  5'- -aGCAUCGCcGCAgcaugcCGCCCcAAUcCGCCg -3'
miRNA:   3'- gcCGUAGCGcCGU------GCGGGcUUA-GCGG- -5'
30013 3' -59.2 NC_006273.1 + 64919 0.66 0.901608
Target:  5'- gGGCAUCuucgacuuucuGCGGUACGCgCa---CGCCa -3'
miRNA:   3'- gCCGUAG-----------CGCCGUGCGgGcuuaGCGG- -5'
30013 3' -59.2 NC_006273.1 + 140239 0.66 0.901608
Target:  5'- gGaGCGuuUCGCGGcCGCGgCUGAGccuUUGCCg -3'
miRNA:   3'- gC-CGU--AGCGCC-GUGCgGGCUU---AGCGG- -5'
30013 3' -59.2 NC_006273.1 + 58442 0.66 0.901608
Target:  5'- -cGCAgCGCGGCAaaCCCGAcUUGCa -3'
miRNA:   3'- gcCGUaGCGCCGUgcGGGCUuAGCGg -5'
30013 3' -59.2 NC_006273.1 + 215855 0.66 0.901608
Target:  5'- uCGGUAUCGaGaGCGCGCCUGGcuucaaAUaCGUCa -3'
miRNA:   3'- -GCCGUAGCgC-CGUGCGGGCU------UA-GCGG- -5'
30013 3' -59.2 NC_006273.1 + 210719 0.66 0.901608
Target:  5'- aCGGCAgCGCGGgu-GCCgGuuUCGCUg -3'
miRNA:   3'- -GCCGUaGCGCCgugCGGgCuuAGCGG- -5'
30013 3' -59.2 NC_006273.1 + 194895 0.66 0.901608
Target:  5'- cCGGCAgcaGCcgGGC-CGCCuCGAccaCGCCg -3'
miRNA:   3'- -GCCGUag-CG--CCGuGCGG-GCUua-GCGG- -5'
30013 3' -59.2 NC_006273.1 + 148813 0.66 0.901608
Target:  5'- aCGGCuuuUCGCGaGCGacCGgCCGGcggcgaucGUCGCUg -3'
miRNA:   3'- -GCCGu--AGCGC-CGU--GCgGGCU--------UAGCGG- -5'
30013 3' -59.2 NC_006273.1 + 186367 0.66 0.901608
Target:  5'- gCGGCAUUG-GuGUACGCgUGAGUgGCUu -3'
miRNA:   3'- -GCCGUAGCgC-CGUGCGgGCUUAgCGG- -5'
30013 3' -59.2 NC_006273.1 + 233345 0.66 0.90101
Target:  5'- aCGGCuccugccAUCGCgcacGGCGCGUCCc---CGCCg -3'
miRNA:   3'- -GCCG-------UAGCG----CCGUGCGGGcuuaGCGG- -5'
30013 3' -59.2 NC_006273.1 + 38452 0.66 0.90101
Target:  5'- aCGGCuccugccAUCGCgcacGGCGCGUCCc---CGCCg -3'
miRNA:   3'- -GCCG-------UAGCG----CCGUGCGGGcuuaGCGG- -5'
30013 3' -59.2 NC_006273.1 + 69435 0.66 0.900409
Target:  5'- uGGCAUgGCGGCGcCGCUguagcggCGGaggacucaagaacGUCGUCa -3'
miRNA:   3'- gCCGUAgCGCCGU-GCGG-------GCU-------------UAGCGG- -5'
30013 3' -59.2 NC_006273.1 + 97999 0.66 0.900409
Target:  5'- aGGCGUcCGCGGCgAUcacggacgauccaaaGCCCGGugcgaggacaacgCGCCg -3'
miRNA:   3'- gCCGUA-GCGCCG-UG---------------CGGGCUua-----------GCGG- -5'
30013 3' -59.2 NC_006273.1 + 14670 0.66 0.897986
Target:  5'- uGGCAUgGUGGCuAC-CCCGuacgugguuuuuaugGGUCGCUu -3'
miRNA:   3'- gCCGUAgCGCCG-UGcGGGC---------------UUAGCGG- -5'
30013 3' -59.2 NC_006273.1 + 90319 0.66 0.89553
Target:  5'- gCGGCGUcgccCGCGGCuAgGCCgaGAcUCGCg -3'
miRNA:   3'- -GCCGUA----GCGCCG-UgCGGg-CUuAGCGg -5'
30013 3' -59.2 NC_006273.1 + 208008 0.66 0.89553
Target:  5'- uCGGCGUCGCuGCugacgaacGCGUCUGGcugugUGCCg -3'
miRNA:   3'- -GCCGUAGCGcCG--------UGCGGGCUua---GCGG- -5'
30013 3' -59.2 NC_006273.1 + 144894 0.66 0.89553
Target:  5'- gGGCcacgcucaaGCGcGCGCGCCCGcucaaGCCg -3'
miRNA:   3'- gCCGuag------CGC-CGUGCGGGCuuag-CGG- -5'
30013 3' -59.2 NC_006273.1 + 229758 0.66 0.89553
Target:  5'- gGGUcugCGgGGCACGCCCccaccgCGCa -3'
miRNA:   3'- gCCGua-GCgCCGUGCGGGcuua--GCGg -5'
30013 3' -59.2 NC_006273.1 + 56958 0.66 0.89553
Target:  5'- aCGGCgaacagaccGUUGCGGCugGCCaCGuacaacagcguGUCGUg -3'
miRNA:   3'- -GCCG---------UAGCGCCGugCGG-GCu----------UAGCGg -5'
30013 3' -59.2 NC_006273.1 + 82011 0.66 0.89553
Target:  5'- aCGGuCGaCGCagGGCACGCgCGugcCGCCg -3'
miRNA:   3'- -GCC-GUaGCG--CCGUGCGgGCuuaGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.