miRNA display CGI


Results 1 - 20 of 272 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30013 3' -59.2 NC_006273.1 + 1100 0.67 0.824187
Target:  5'- gGGCGUCGCGGgAUGgCgGGcuGUUGCg -3'
miRNA:   3'- gCCGUAGCGCCgUGCgGgCU--UAGCGg -5'
30013 3' -59.2 NC_006273.1 + 1107 0.7 0.700216
Target:  5'- gCGGCAacaacagcaacUUuuGGCACgGCCCGGAgCGCCu -3'
miRNA:   3'- -GCCGU-----------AGcgCCGUG-CGGGCUUaGCGG- -5'
30013 3' -59.2 NC_006273.1 + 1926 0.67 0.832113
Target:  5'- uGGCGcugggCGCGGUGCuGCCCGcgcGGUgGCUg -3'
miRNA:   3'- gCCGUa----GCGCCGUG-CGGGC---UUAgCGG- -5'
30013 3' -59.2 NC_006273.1 + 2002 0.67 0.832113
Target:  5'- gCGGCGa-GCGGCACGgagaCGGAggcCGCCg -3'
miRNA:   3'- -GCCGUagCGCCGUGCgg--GCUUa--GCGG- -5'
30013 3' -59.2 NC_006273.1 + 2239 0.66 0.876084
Target:  5'- gCGGCGUCGgGGaC-CGUgCCGcg-CGCCa -3'
miRNA:   3'- -GCCGUAGCgCC-GuGCG-GGCuuaGCGG- -5'
30013 3' -59.2 NC_006273.1 + 2387 0.67 0.862148
Target:  5'- uGGCGcuggggCGCGaGUcgGCGCCCGc--CGCCg -3'
miRNA:   3'- gCCGUa-----GCGC-CG--UGCGGGCuuaGCGG- -5'
30013 3' -59.2 NC_006273.1 + 2420 0.71 0.623542
Target:  5'- aGGCcgCGCGGCGgcugcUGCCCGAGcUgGaCCg -3'
miRNA:   3'- gCCGuaGCGCCGU-----GCGGGCUU-AgC-GG- -5'
30013 3' -59.2 NC_006273.1 + 4179 0.71 0.642812
Target:  5'- aCGGagAUCGCGGUccuCGCCaugaGGAUCGCg -3'
miRNA:   3'- -GCCg-UAGCGCCGu--GCGGg---CUUAGCGg -5'
30013 3' -59.2 NC_006273.1 + 12065 0.75 0.398036
Target:  5'- uGGCAgCGCGGCugucaccgacGgGCCCGAAaCGCCc -3'
miRNA:   3'- gCCGUaGCGCCG----------UgCGGGCUUaGCGG- -5'
30013 3' -59.2 NC_006273.1 + 14670 0.66 0.897986
Target:  5'- uGGCAUgGUGGCuAC-CCCGuacgugguuuuuaugGGUCGCUu -3'
miRNA:   3'- gCCGUAgCGCCG-UGcGGGC---------------UUAGCGG- -5'
30013 3' -59.2 NC_006273.1 + 16893 0.66 0.889247
Target:  5'- gCGGCG-CGCGGcCAgGCUgGAA-CGCa -3'
miRNA:   3'- -GCCGUaGCGCC-GUgCGGgCUUaGCGg -5'
30013 3' -59.2 NC_006273.1 + 17101 0.66 0.89553
Target:  5'- gCGGCGacuUCGCGGaACGCC---GUCGaCCg -3'
miRNA:   3'- -GCCGU---AGCGCCgUGCGGgcuUAGC-GG- -5'
30013 3' -59.2 NC_006273.1 + 19234 0.68 0.807876
Target:  5'- aGGaCGaaaGCGGC-CGCCCccggaGAAUUGCCa -3'
miRNA:   3'- gCC-GUag-CGCCGuGCGGG-----CUUAGCGG- -5'
30013 3' -59.2 NC_006273.1 + 21416 0.7 0.681205
Target:  5'- gCGGUAUgGCuGCGCGCCucCGuccucGUCGCCu -3'
miRNA:   3'- -GCCGUAgCGcCGUGCGG--GCu----UAGCGG- -5'
30013 3' -59.2 NC_006273.1 + 21557 0.67 0.824187
Target:  5'- aCGGCggCGCGGCgcaGCGgCUGAGccucucguuUCGUCu -3'
miRNA:   3'- -GCCGuaGCGCCG---UGCgGGCUU---------AGCGG- -5'
30013 3' -59.2 NC_006273.1 + 22297 0.69 0.746721
Target:  5'- gCGGCAgcgguacccgaCGCGGCagcgGCGCCaaCGAA-CGCCg -3'
miRNA:   3'- -GCCGUa----------GCGCCG----UGCGG--GCUUaGCGG- -5'
30013 3' -59.2 NC_006273.1 + 22708 0.66 0.89553
Target:  5'- uCGGgAUUGgcuaCGGCugGUCCGucAUCGUCu -3'
miRNA:   3'- -GCCgUAGC----GCCGugCGGGCu-UAGCGG- -5'
30013 3' -59.2 NC_006273.1 + 23490 0.66 0.87676
Target:  5'- gGGUcucuuugacacgagCGCGGCACGCC---GUUGCCa -3'
miRNA:   3'- gCCGua------------GCGCCGUGCGGgcuUAGCGG- -5'
30013 3' -59.2 NC_006273.1 + 24440 0.77 0.323348
Target:  5'- gGuGCAUCGCuucgaGGUuguCGUCCGAAUCGCCg -3'
miRNA:   3'- gC-CGUAGCG-----CCGu--GCGGGCUUAGCGG- -5'
30013 3' -59.2 NC_006273.1 + 29761 0.72 0.54718
Target:  5'- gGGUcUCGaCGGCGCgcaGCCCGAcgCGCg -3'
miRNA:   3'- gCCGuAGC-GCCGUG---CGGGCUuaGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.