miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30013 5' -55.1 NC_006273.1 + 155553 0.66 0.978633
Target:  5'- cCCGAGGUggugcagcgcggcCUuucgcgGCUGG-UGCUACGCGAUg -3'
miRNA:   3'- -GGCUCCA-------------GA------UGGUCuGCGAUGCGCUA- -5'
30013 5' -55.1 NC_006273.1 + 213564 0.66 0.97656
Target:  5'- cCCGAGGUgCggggAUgUAGugGaCUACGCGGUg -3'
miRNA:   3'- -GGCUCCA-Ga---UG-GUCugC-GAUGCGCUA- -5'
30013 5' -55.1 NC_006273.1 + 63528 0.66 0.97143
Target:  5'- gCCGcGGUUUuuaAGACGgUACGCGAUu -3'
miRNA:   3'- -GGCuCCAGAuggUCUGCgAUGCGCUA- -5'
30013 5' -55.1 NC_006273.1 + 81450 0.66 0.971153
Target:  5'- cCCGaAGG-C-ACCAGAUGCUgacgauaGCGCGGc -3'
miRNA:   3'- -GGC-UCCaGaUGGUCUGCGA-------UGCGCUa -5'
30013 5' -55.1 NC_006273.1 + 17583 0.66 0.968582
Target:  5'- gCCGAGGUUUcggaaGCCgaAGugGaaGCGCGAc -3'
miRNA:   3'- -GGCUCCAGA-----UGG--UCugCgaUGCGCUa -5'
30013 5' -55.1 NC_006273.1 + 185930 0.66 0.968582
Target:  5'- gCCGAGGUg-ACCAagcGGgGCUACGCu-- -3'
miRNA:   3'- -GGCUCCAgaUGGU---CUgCGAUGCGcua -5'
30013 5' -55.1 NC_006273.1 + 142683 0.66 0.965538
Target:  5'- gCGAGGUCUgGCCGcucGAuCGCUAuCGCGu- -3'
miRNA:   3'- gGCUCCAGA-UGGU---CU-GCGAU-GCGCua -5'
30013 5' -55.1 NC_006273.1 + 73126 0.66 0.964586
Target:  5'- gCCGAcGUCUgcgccgcaaacugcGCCGGugGCUGCGaCGu- -3'
miRNA:   3'- -GGCUcCAGA--------------UGGUCugCGAUGC-GCua -5'
30013 5' -55.1 NC_006273.1 + 229754 0.67 0.958841
Target:  5'- aCCGGGGUCUGCgGGgcACGCccccaccGCGCa-- -3'
miRNA:   3'- -GGCUCCAGAUGgUC--UGCGa------UGCGcua -5'
30013 5' -55.1 NC_006273.1 + 233711 0.67 0.958841
Target:  5'- aCGGGGUa-GCCGaGCGCUGCGCc-- -3'
miRNA:   3'- gGCUCCAgaUGGUcUGCGAUGCGcua -5'
30013 5' -55.1 NC_006273.1 + 82380 0.67 0.955178
Target:  5'- uCUGGGGacgugUCgcgGCCAGAgcaugcaccaggUGCUGCGCGAc -3'
miRNA:   3'- -GGCUCC-----AGa--UGGUCU------------GCGAUGCGCUa -5'
30013 5' -55.1 NC_006273.1 + 161394 0.67 0.955178
Target:  5'- aCGAGGgcgagUACgAGAaucUGCUGCGCGAg -3'
miRNA:   3'- gGCUCCag---AUGgUCU---GCGAUGCGCUa -5'
30013 5' -55.1 NC_006273.1 + 148497 0.67 0.950901
Target:  5'- uCCGuGGUUUcGCUGGGCagccgccGCUACGCGAc -3'
miRNA:   3'- -GGCuCCAGA-UGGUCUG-------CGAUGCGCUa -5'
30013 5' -55.1 NC_006273.1 + 8255 0.67 0.947204
Target:  5'- aCGuAGGUCaggauCCAGAUGCUAaugGCGAUc -3'
miRNA:   3'- gGC-UCCAGau---GGUCUGCGAUg--CGCUA- -5'
30013 5' -55.1 NC_006273.1 + 19756 0.68 0.942887
Target:  5'- gUCGAGGaggACgAGugGCUACGgGAg -3'
miRNA:   3'- -GGCUCCagaUGgUCugCGAUGCgCUa -5'
30013 5' -55.1 NC_006273.1 + 106839 0.68 0.942887
Target:  5'- -aGGGGUCUcCCAGAauCGCUgaaaacgggaGCGCGGc -3'
miRNA:   3'- ggCUCCAGAuGGUCU--GCGA----------UGCGCUa -5'
30013 5' -55.1 NC_006273.1 + 49906 0.68 0.938347
Target:  5'- aCGaAGGgcc-CCAgGGCGCUGCGCGAa -3'
miRNA:   3'- gGC-UCCagauGGU-CUGCGAUGCGCUa -5'
30013 5' -55.1 NC_006273.1 + 195797 0.68 0.928589
Target:  5'- aUCGcAGGUCgUACCc-GCGCUGCGCGc- -3'
miRNA:   3'- -GGC-UCCAG-AUGGucUGCGAUGCGCua -5'
30013 5' -55.1 NC_006273.1 + 38628 0.69 0.90636
Target:  5'- cCCGAGcaggacuaucGUCUGCCGG-CGCaggACGUGGUg -3'
miRNA:   3'- -GGCUC----------CAGAUGGUCuGCGa--UGCGCUA- -5'
30013 5' -55.1 NC_006273.1 + 844 0.69 0.900243
Target:  5'- aCGGGGUgUugCGGGCGCU-CGgGGg -3'
miRNA:   3'- gGCUCCAgAugGUCUGCGAuGCgCUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.