miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30019 3' -49.8 NC_006273.1 + 131465 0.66 0.999714
Target:  5'- gCGUgUCCGCUUucguGGCGUACGccgugGCGCg -3'
miRNA:   3'- -GCAgGGGCGAG----UUGUAUGCaua--UGUG- -5'
30019 3' -49.8 NC_006273.1 + 232739 0.66 0.999714
Target:  5'- aGUCCCagaGCUUGA---GCGUcgGCGCg -3'
miRNA:   3'- gCAGGGg--CGAGUUguaUGCAuaUGUG- -5'
30019 3' -49.8 NC_006273.1 + 31629 0.66 0.999714
Target:  5'- -uUCCgCCGCUUAACA-ACGUGUcCAg -3'
miRNA:   3'- gcAGG-GGCGAGUUGUaUGCAUAuGUg -5'
30019 3' -49.8 NC_006273.1 + 169030 0.66 0.999641
Target:  5'- aGUUCCUGCUUGGCGUugucguccaACGgcUGCAg -3'
miRNA:   3'- gCAGGGGCGAGUUGUA---------UGCauAUGUg -5'
30019 3' -49.8 NC_006273.1 + 155792 0.66 0.999641
Target:  5'- aGUaCCCCGUggacccuGCcgACGUAUACAg -3'
miRNA:   3'- gCA-GGGGCGagu----UGuaUGCAUAUGUg -5'
30019 3' -49.8 NC_006273.1 + 79422 0.66 0.999641
Target:  5'- --aCCCUGCUCAAUAaagucACGUuuuccuUACACg -3'
miRNA:   3'- gcaGGGGCGAGUUGUa----UGCAu-----AUGUG- -5'
30019 3' -49.8 NC_006273.1 + 149720 0.66 0.999447
Target:  5'- aCGUCaCCCGCgaggugAACGUGCGcaaACGCg -3'
miRNA:   3'- -GCAG-GGGCGag----UUGUAUGCauaUGUG- -5'
30019 3' -49.8 NC_006273.1 + 74853 0.66 0.999447
Target:  5'- gCGUCCUCGUcgaUCAccaGCGgucGCGUcgGCACc -3'
miRNA:   3'- -GCAGGGGCG---AGU---UGUa--UGCAuaUGUG- -5'
30019 3' -49.8 NC_006273.1 + 212409 0.66 0.999447
Target:  5'- gCGUCCgCCGUguuucUCGGCGUACugcUGCACc -3'
miRNA:   3'- -GCAGG-GGCG-----AGUUGUAUGcauAUGUG- -5'
30019 3' -49.8 NC_006273.1 + 165306 0.66 0.999447
Target:  5'- uGUCCgaGCUCAACA-GCGUcaGCAg -3'
miRNA:   3'- gCAGGggCGAGUUGUaUGCAuaUGUg -5'
30019 3' -49.8 NC_006273.1 + 67479 0.66 0.999318
Target:  5'- cCGUccCCCCGCUgAGCGUugGcg-GCGa -3'
miRNA:   3'- -GCA--GGGGCGAgUUGUAugCauaUGUg -5'
30019 3' -49.8 NC_006273.1 + 107768 0.67 0.999166
Target:  5'- ---aCCUGgUCGACGUGC-UGUACACg -3'
miRNA:   3'- gcagGGGCgAGUUGUAUGcAUAUGUG- -5'
30019 3' -49.8 NC_006273.1 + 109760 0.67 0.999166
Target:  5'- gCGUCgCCCGCUacuggAACAggUGUGUACAg -3'
miRNA:   3'- -GCAG-GGGCGAg----UUGUauGCAUAUGUg -5'
30019 3' -49.8 NC_006273.1 + 3169 0.67 0.999114
Target:  5'- cCGaCCCCGCUgccagauugugccgCGACAUGCG---ACGCg -3'
miRNA:   3'- -GCaGGGGCGA--------------GUUGUAUGCauaUGUG- -5'
30019 3' -49.8 NC_006273.1 + 86756 0.67 0.998984
Target:  5'- gCGUCCaacgCCGuCUCGcGCAUuaACGUGUGCAg -3'
miRNA:   3'- -GCAGG----GGC-GAGU-UGUA--UGCAUAUGUg -5'
30019 3' -49.8 NC_006273.1 + 192696 0.67 0.99877
Target:  5'- gGUCaaCGCcgUCAACAagcuCGUGUACACg -3'
miRNA:   3'- gCAGggGCG--AGUUGUau--GCAUAUGUG- -5'
30019 3' -49.8 NC_006273.1 + 46012 0.67 0.99877
Target:  5'- uCGUCCCCGCaCAcGCGUGCcgccuCACg -3'
miRNA:   3'- -GCAGGGGCGaGU-UGUAUGcauauGUG- -5'
30019 3' -49.8 NC_006273.1 + 198745 0.67 0.998519
Target:  5'- --aCCgCCGCUCGuuGCGccUACGUAgagGCGCa -3'
miRNA:   3'- gcaGG-GGCGAGU--UGU--AUGCAUa--UGUG- -5'
30019 3' -49.8 NC_006273.1 + 207056 0.67 0.998225
Target:  5'- gGUCCCgGgUCGGCGcugACGUuccagccaGUACGCg -3'
miRNA:   3'- gCAGGGgCgAGUUGUa--UGCA--------UAUGUG- -5'
30019 3' -49.8 NC_006273.1 + 184312 0.67 0.998225
Target:  5'- uGUUUCUGUUCGAUGUACGUAc-CACg -3'
miRNA:   3'- gCAGGGGCGAGUUGUAUGCAUauGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.