miRNA display CGI


Results 1 - 20 of 170 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30019 5' -56.4 NC_006273.1 + 218805 0.66 0.950928
Target:  5'- gGGCG---GCUGGCGCuaccucgaagggccaGCaguccgucaAGCAGCCGa -3'
miRNA:   3'- aCUGCauaUGACCGCG---------------CG---------UCGUCGGC- -5'
30019 5' -56.4 NC_006273.1 + 213522 0.66 0.949304
Target:  5'- aGaACGgg-GCcgcGGCcCGCAGCAGCCa -3'
miRNA:   3'- aC-UGCauaUGa--CCGcGCGUCGUCGGc -5'
30019 5' -56.4 NC_006273.1 + 162375 0.66 0.949304
Target:  5'- cGGCGcuaGUGgUGGCGgugGCGGCGGCgGg -3'
miRNA:   3'- aCUGCa--UAUgACCGCg--CGUCGUCGgC- -5'
30019 5' -56.4 NC_006273.1 + 45576 0.66 0.949304
Target:  5'- aGGCGguacaaGCUGcCGUGCAGgCGGCCa -3'
miRNA:   3'- aCUGCaua---UGACcGCGCGUC-GUCGGc -5'
30019 5' -56.4 NC_006273.1 + 111215 0.66 0.949304
Target:  5'- aGGCGgcgGCggUGGCGUugGCagcaauAGCAGCCGa -3'
miRNA:   3'- aCUGCauaUG--ACCGCG--CG------UCGUCGGC- -5'
30019 5' -56.4 NC_006273.1 + 35492 0.66 0.949304
Target:  5'- cGGCGUGgaGCUGacauaCGCGCAGCAGaUUGg -3'
miRNA:   3'- aCUGCAUa-UGACc----GCGCGUCGUC-GGC- -5'
30019 5' -56.4 NC_006273.1 + 202548 0.66 0.949304
Target:  5'- gGACcgcaGCgUGGCcgGCGUGGCGGCCGa -3'
miRNA:   3'- aCUGcauaUG-ACCG--CGCGUCGUCGGC- -5'
30019 5' -56.4 NC_006273.1 + 124422 0.66 0.948893
Target:  5'- gGGCGacacGUGCUGcggccgcgcgggcGUGCGCGGCucGCCGa -3'
miRNA:   3'- aCUGCa---UAUGAC-------------CGCGCGUCGu-CGGC- -5'
30019 5' -56.4 NC_006273.1 + 21467 0.66 0.94509
Target:  5'- -uGCGUucGCUGGUGguggacgcaCGCAGCGGUCa -3'
miRNA:   3'- acUGCAuaUGACCGC---------GCGUCGUCGGc -5'
30019 5' -56.4 NC_006273.1 + 75573 0.66 0.94509
Target:  5'- cGGCG---ACUGuGCGCGCcGCuGGCCa -3'
miRNA:   3'- aCUGCauaUGAC-CGCGCGuCG-UCGGc -5'
30019 5' -56.4 NC_006273.1 + 173983 0.66 0.94509
Target:  5'- -uAUGUcUGgUGGCGCGCgcGGCAGCa- -3'
miRNA:   3'- acUGCAuAUgACCGCGCG--UCGUCGgc -5'
30019 5' -56.4 NC_006273.1 + 2326 0.66 0.94509
Target:  5'- -cACGUGUacccGCUGGCgGCGgAGCuGUCGc -3'
miRNA:   3'- acUGCAUA----UGACCG-CGCgUCGuCGGC- -5'
30019 5' -56.4 NC_006273.1 + 197219 0.66 0.94509
Target:  5'- -cACGUGUacccGCUGGCgGCGgAGCuGUCGc -3'
miRNA:   3'- acUGCAUA----UGACCG-CGCgUCGuCGGC- -5'
30019 5' -56.4 NC_006273.1 + 185281 0.66 0.94509
Target:  5'- -aGCGgugGCUGGagaaGCGCAGC-GUCGg -3'
miRNA:   3'- acUGCauaUGACCg---CGCGUCGuCGGC- -5'
30019 5' -56.4 NC_006273.1 + 110415 0.66 0.94509
Target:  5'- cUGACGUugAUGC-GGCGCGUagaaGGCAaCCa -3'
miRNA:   3'- -ACUGCA--UAUGaCCGCGCG----UCGUcGGc -5'
30019 5' -56.4 NC_006273.1 + 44623 0.66 0.94509
Target:  5'- cUGcACGUGUACcugUGGUacGUucgGCGGCAGCUGg -3'
miRNA:   3'- -AC-UGCAUAUG---ACCG--CG---CGUCGUCGGC- -5'
30019 5' -56.4 NC_006273.1 + 141118 0.66 0.94509
Target:  5'- aGGCGggaGCgGGCGCagcgugcggaccGCAGCAcgGCCGg -3'
miRNA:   3'- aCUGCauaUGaCCGCG------------CGUCGU--CGGC- -5'
30019 5' -56.4 NC_006273.1 + 148638 0.66 0.944657
Target:  5'- -uACGUGUACgggauccUGGCGC-CGGaGGCCGg -3'
miRNA:   3'- acUGCAUAUG-------ACCGCGcGUCgUCGGC- -5'
30019 5' -56.4 NC_006273.1 + 16338 0.66 0.943783
Target:  5'- gGACGa--ACUGGCGCGUuacGGUaugauguacaccgaAGCCGu -3'
miRNA:   3'- aCUGCauaUGACCGCGCG---UCG--------------UCGGC- -5'
30019 5' -56.4 NC_006273.1 + 10861 0.66 0.941107
Target:  5'- uUGuACGUGUACgccaucagcacgaugGGCGCcaGGUAGCCGc -3'
miRNA:   3'- -AC-UGCAUAUGa--------------CCGCGcgUCGUCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.