miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30028 3' -57.2 NC_006273.1 + 170869 0.66 0.947721
Target:  5'- --gACACCGaUgUCGaGcCGGCGGG-CGg -3'
miRNA:   3'- auaUGUGGC-AgAGC-CuGCCGCCCuGC- -5'
30028 3' -57.2 NC_006273.1 + 196182 0.66 0.947721
Target:  5'- -cUGCuGCCG-CUCGGACGGCcGuACGg -3'
miRNA:   3'- auAUG-UGGCaGAGCCUGCCGcCcUGC- -5'
30028 3' -57.2 NC_006273.1 + 1289 0.66 0.947721
Target:  5'- -cUGCuGCCG-CUCGGACGGCcGuACGg -3'
miRNA:   3'- auAUG-UGGCaGAGCCUGCCGcCcUGC- -5'
30028 3' -57.2 NC_006273.1 + 71460 0.66 0.943508
Target:  5'- --aACGCCGcgaUCGaGGCGGCGGcGAUc -3'
miRNA:   3'- auaUGUGGCag-AGC-CUGCCGCC-CUGc -5'
30028 3' -57.2 NC_006273.1 + 96032 0.66 0.943508
Target:  5'- --gGCGCCaUCUUGGA-GGaGGGGCGa -3'
miRNA:   3'- auaUGUGGcAGAGCCUgCCgCCCUGC- -5'
30028 3' -57.2 NC_006273.1 + 188855 0.66 0.93908
Target:  5'- gGUGCGCggcaGUCUCGGAUuccGCGGuGGCu -3'
miRNA:   3'- aUAUGUGg---CAGAGCCUGc--CGCC-CUGc -5'
30028 3' -57.2 NC_006273.1 + 142513 0.66 0.93908
Target:  5'- --gGCACCGccUCUUGGGCGGUucuacGGGCc -3'
miRNA:   3'- auaUGUGGC--AGAGCCUGCCGc----CCUGc -5'
30028 3' -57.2 NC_006273.1 + 182818 0.66 0.934434
Target:  5'- --gGCACCGguucCUgUGGcaACGGCGGcGACGa -3'
miRNA:   3'- auaUGUGGCa---GA-GCC--UGCCGCC-CUGC- -5'
30028 3' -57.2 NC_006273.1 + 1739 0.66 0.934434
Target:  5'- -cUGCGCCGg--CGGugGGCcGGcACGa -3'
miRNA:   3'- auAUGUGGCagaGCCugCCGcCC-UGC- -5'
30028 3' -57.2 NC_006273.1 + 196631 0.66 0.934434
Target:  5'- -cUGCGCCGg--CGGugGGCcGGcACGa -3'
miRNA:   3'- auAUGUGGCagaGCCugCCGcCC-UGC- -5'
30028 3' -57.2 NC_006273.1 + 21539 0.66 0.92957
Target:  5'- --gGCGCuggCGUUUCgaGGACGGCGGcGCGg -3'
miRNA:   3'- auaUGUG---GCAGAG--CCUGCCGCCcUGC- -5'
30028 3' -57.2 NC_006273.1 + 139819 0.66 0.926547
Target:  5'- --gGgGCCuguucccuucccggGUCUCGGACgagucgacacgccgGGUGGGACGg -3'
miRNA:   3'- auaUgUGG--------------CAGAGCCUG--------------CCGCCCUGC- -5'
30028 3' -57.2 NC_006273.1 + 117769 0.66 0.924488
Target:  5'- --gGCGCCGUa--GGACG-CGGGAUa -3'
miRNA:   3'- auaUGUGGCAgagCCUGCcGCCCUGc -5'
30028 3' -57.2 NC_006273.1 + 85731 0.66 0.924488
Target:  5'- --aACGCCG---CGGGCGGCGuGGAgGg -3'
miRNA:   3'- auaUGUGGCagaGCCUGCCGC-CCUgC- -5'
30028 3' -57.2 NC_006273.1 + 101726 0.67 0.919187
Target:  5'- --gGCGCCGUggaaagugaggCUCaGACGGCGGucgccGGCGg -3'
miRNA:   3'- auaUGUGGCA-----------GAGcCUGCCGCC-----CUGC- -5'
30028 3' -57.2 NC_006273.1 + 187188 0.67 0.919187
Target:  5'- gUGUGgGCCGgccCUCGGGguGCGGGugGc -3'
miRNA:   3'- -AUAUgUGGCa--GAGCCUgcCGCCCugC- -5'
30028 3' -57.2 NC_006273.1 + 40917 0.67 0.913667
Target:  5'- --cGCACCGUCugcgcUCGGGCGGaCGcGuGCGg -3'
miRNA:   3'- auaUGUGGCAG-----AGCCUGCC-GC-CcUGC- -5'
30028 3' -57.2 NC_006273.1 + 148121 0.67 0.913104
Target:  5'- uUGUGCACCGacuccaugUCUCuGGcCGGCGccagaccGGACGa -3'
miRNA:   3'- -AUAUGUGGC--------AGAG-CCuGCCGC-------CCUGC- -5'
30028 3' -57.2 NC_006273.1 + 32327 0.67 0.907931
Target:  5'- --aAUACUGUUgCuGAUGGUGGGACGa -3'
miRNA:   3'- auaUGUGGCAGaGcCUGCCGCCCUGC- -5'
30028 3' -57.2 NC_006273.1 + 116295 0.67 0.907931
Target:  5'- -uUGC-CCGUg-CGGACccGCGGGACGg -3'
miRNA:   3'- auAUGuGGCAgaGCCUGc-CGCCCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.