Results 1 - 20 of 63 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
30028 | 3' | -57.2 | NC_006273.1 | + | 38165 | 1.06 | 0.005966 |
Target: 5'- aUAUACACCGUCUCGGACGGCGGGACGc -3' miRNA: 3'- -AUAUGUGGCAGAGCCUGCCGCCCUGC- -5' |
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30028 | 3' | -57.2 | NC_006273.1 | + | 204638 | 0.75 | 0.504022 |
Target: 5'- --gGCGCCGuUCUCGGGCaGCGaGGGCa -3' miRNA: 3'- auaUGUGGC-AGAGCCUGcCGC-CCUGc -5' |
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30028 | 3' | -57.2 | NC_006273.1 | + | 157373 | 0.74 | 0.570364 |
Target: 5'- --gGCugCGUCgccUGcGACGGCGGGugGa -3' miRNA: 3'- auaUGugGCAGa--GC-CUGCCGCCCugC- -5' |
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30028 | 3' | -57.2 | NC_006273.1 | + | 115368 | 0.73 | 0.589756 |
Target: 5'- --aACACCGUCgcgUCGGACGcGaCGGuGACGg -3' miRNA: 3'- auaUGUGGCAG---AGCCUGC-C-GCC-CUGC- -5' |
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30028 | 3' | -57.2 | NC_006273.1 | + | 33414 | 0.73 | 0.619039 |
Target: 5'- --cGCACCGcCUCGGGCGuCGGcGGCGc -3' miRNA: 3'- auaUGUGGCaGAGCCUGCcGCC-CUGC- -5' |
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30028 | 3' | -57.2 | NC_006273.1 | + | 31353 | 0.73 | 0.619039 |
Target: 5'- aGUACGCCacGUCUCuGcGGCGGCuGGACGa -3' miRNA: 3'- aUAUGUGG--CAGAG-C-CUGCCGcCCUGC- -5' |
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30028 | 3' | -57.2 | NC_006273.1 | + | 142280 | 0.72 | 0.658176 |
Target: 5'- cUGUGCcgaCGUCgugUGGGCGGCGuGGACGc -3' miRNA: 3'- -AUAUGug-GCAGa--GCCUGCCGC-CCUGC- -5' |
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30028 | 3' | -57.2 | NC_006273.1 | + | 189308 | 0.72 | 0.658176 |
Target: 5'- cGUACACCG-CggcaccugCGGcguCGGCGGGugGg -3' miRNA: 3'- aUAUGUGGCaGa-------GCCu--GCCGCCCugC- -5' |
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30028 | 3' | -57.2 | NC_006273.1 | + | 141173 | 0.72 | 0.687353 |
Target: 5'- -cUGCGCCGgg--GGGCGGCGGGcACGc -3' miRNA: 3'- auAUGUGGCagagCCUGCCGCCC-UGC- -5' |
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30028 | 3' | -57.2 | NC_006273.1 | + | 141025 | 0.7 | 0.762728 |
Target: 5'- --gGCcCCGgauggugCUCcaGGGCGGUGGGACGg -3' miRNA: 3'- auaUGuGGCa------GAG--CCUGCCGCCCUGC- -5' |
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30028 | 3' | -57.2 | NC_006273.1 | + | 228715 | 0.7 | 0.771758 |
Target: 5'- gGUGgGuuG-UUCGGAaaCGGCGGGACGg -3' miRNA: 3'- aUAUgUggCaGAGCCU--GCCGCCCUGC- -5' |
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30028 | 3' | -57.2 | NC_006273.1 | + | 188406 | 0.7 | 0.771758 |
Target: 5'- gAUcCACCGcCUCgaccguggugaaGGGCGGUGGGugGa -3' miRNA: 3'- aUAuGUGGCaGAG------------CCUGCCGCCCugC- -5' |
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30028 | 3' | -57.2 | NC_006273.1 | + | 208578 | 0.7 | 0.771758 |
Target: 5'- --aGCGCCGUCUUggaaaaGGACGGCcaGGAUGc -3' miRNA: 3'- auaUGUGGCAGAG------CCUGCCGc-CCUGC- -5' |
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30028 | 3' | -57.2 | NC_006273.1 | + | 79881 | 0.7 | 0.771758 |
Target: 5'- --aACGCCGUCcugacUGGACGGCGcagauugcaaGGGCGg -3' miRNA: 3'- auaUGUGGCAGa----GCCUGCCGC----------CCUGC- -5' |
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30028 | 3' | -57.2 | NC_006273.1 | + | 133281 | 0.7 | 0.771758 |
Target: 5'- gAUGcCGCCGUCUCGGGCGcaaGCGGcGGu- -3' miRNA: 3'- aUAU-GUGGCAGAGCCUGC---CGCC-CUgc -5' |
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30028 | 3' | -57.2 | NC_006273.1 | + | 31664 | 0.7 | 0.780673 |
Target: 5'- --aGCugCGUCgucaaGGACGGCGuguuGGACGc -3' miRNA: 3'- auaUGugGCAGag---CCUGCCGC----CCUGC- -5' |
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30028 | 3' | -57.2 | NC_006273.1 | + | 94840 | 0.7 | 0.780673 |
Target: 5'- gGUGgGCCGgg-UGGACGGUggugGGGACGg -3' miRNA: 3'- aUAUgUGGCagaGCCUGCCG----CCCUGC- -5' |
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30028 | 3' | -57.2 | NC_006273.1 | + | 63772 | 0.7 | 0.789467 |
Target: 5'- --cGCGCC-UCUCGGAggaCGGCGuGACGg -3' miRNA: 3'- auaUGUGGcAGAGCCU---GCCGCcCUGC- -5' |
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30028 | 3' | -57.2 | NC_006273.1 | + | 130968 | 0.69 | 0.806658 |
Target: 5'- --gACGCaaaaGUgCUCGGacucGCGGCGGGugGc -3' miRNA: 3'- auaUGUGg---CA-GAGCC----UGCCGCCCugC- -5' |
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30028 | 3' | -57.2 | NC_006273.1 | + | 60242 | 0.69 | 0.806658 |
Target: 5'- cGUcCACCGcgaCUgGGcACGGCGGGACc -3' miRNA: 3'- aUAuGUGGCa--GAgCC-UGCCGCCCUGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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