miRNA display CGI


Results 21 - 40 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30028 3' -57.2 NC_006273.1 + 32327 0.67 0.907931
Target:  5'- --aAUACUGUUgCuGAUGGUGGGACGa -3'
miRNA:   3'- auaUGUGGCAGaGcCUGCCGCCCUGC- -5'
30028 3' -57.2 NC_006273.1 + 117877 0.67 0.895814
Target:  5'- --aGCACCGUCaCGGgggcaGCGGC-GGACa -3'
miRNA:   3'- auaUGUGGCAGaGCC-----UGCCGcCCUGc -5'
30028 3' -57.2 NC_006273.1 + 178801 0.68 0.889439
Target:  5'- -cUACcugaCGUCcaaagguggaUCGGGCGGCGGcGGCGg -3'
miRNA:   3'- auAUGug--GCAG----------AGCCUGCCGCC-CUGC- -5'
30028 3' -57.2 NC_006273.1 + 197182 0.68 0.889439
Target:  5'- ---cCGCCGUCUcCGGaugagcggccGCGGCGcGGGCu -3'
miRNA:   3'- auauGUGGCAGA-GCC----------UGCCGC-CCUGc -5'
30028 3' -57.2 NC_006273.1 + 31758 0.68 0.889439
Target:  5'- --cGgGCCGUCgCGGACGaaaGUGGGGCc -3'
miRNA:   3'- auaUgUGGCAGaGCCUGC---CGCCCUGc -5'
30028 3' -57.2 NC_006273.1 + 30768 0.68 0.889439
Target:  5'- --gGCGCCGg--CGG-CGGUGGcGACGa -3'
miRNA:   3'- auaUGUGGCagaGCCuGCCGCC-CUGC- -5'
30028 3' -57.2 NC_006273.1 + 139659 0.68 0.882856
Target:  5'- --cACGuuGUCgCGGACGuggcuuGUGGGACGg -3'
miRNA:   3'- auaUGUggCAGaGCCUGC------CGCCCUGC- -5'
30028 3' -57.2 NC_006273.1 + 163062 0.68 0.882856
Target:  5'- gGUGCAggaGUC-CGaGGCGGCGGcGACGg -3'
miRNA:   3'- aUAUGUgg-CAGaGC-CUGCCGCC-CUGC- -5'
30028 3' -57.2 NC_006273.1 + 34524 0.68 0.882856
Target:  5'- aAUGCugCGgaUCGGGCGGCaaGGGcACGc -3'
miRNA:   3'- aUAUGugGCagAGCCUGCCG--CCC-UGC- -5'
30028 3' -57.2 NC_006273.1 + 76533 0.68 0.882856
Target:  5'- cGU-CGCCG-CUCGGcGCGGCGcacgaGGACGu -3'
miRNA:   3'- aUAuGUGGCaGAGCC-UGCCGC-----CCUGC- -5'
30028 3' -57.2 NC_006273.1 + 162230 0.68 0.876069
Target:  5'- ---cCGCCGUCUgcguguccucguUGGguggcaGCGGCGGGACu -3'
miRNA:   3'- auauGUGGCAGA------------GCC------UGCCGCCCUGc -5'
30028 3' -57.2 NC_006273.1 + 169569 0.68 0.876069
Target:  5'- -cUGCGCCGcCgauugCGGACcGCaGGGGCGa -3'
miRNA:   3'- auAUGUGGCaGa----GCCUGcCG-CCCUGC- -5'
30028 3' -57.2 NC_006273.1 + 140677 0.68 0.869084
Target:  5'- --aACGCCGcaggCGacGACGGCGGGugGu -3'
miRNA:   3'- auaUGUGGCaga-GC--CUGCCGCCCugC- -5'
30028 3' -57.2 NC_006273.1 + 189941 0.68 0.861903
Target:  5'- --cACAgCCGUCugcagcucgUCGGcCGGCGuGGGCGg -3'
miRNA:   3'- auaUGU-GGCAG---------AGCCuGCCGC-CCUGC- -5'
30028 3' -57.2 NC_006273.1 + 144420 0.68 0.854533
Target:  5'- --gGCGCCG-CggcggCGGACGGUucGGGugGc -3'
miRNA:   3'- auaUGUGGCaGa----GCCUGCCG--CCCugC- -5'
30028 3' -57.2 NC_006273.1 + 19195 0.68 0.853786
Target:  5'- aAUGCGgCGUCgaauuacCGGGCGGCGauagcagcgacgaGGACGa -3'
miRNA:   3'- aUAUGUgGCAGa------GCCUGCCGC-------------CCUGC- -5'
30028 3' -57.2 NC_006273.1 + 188368 0.68 0.853786
Target:  5'- --aACACCGcggUCauccaagUCGGGCGGCgucgGGGACGc -3'
miRNA:   3'- auaUGUGGC---AG-------AGCCUGCCG----CCCUGC- -5'
30028 3' -57.2 NC_006273.1 + 130966 0.69 0.846979
Target:  5'- --aACACCGUCaaCGG-CGGuCGGaGACGg -3'
miRNA:   3'- auaUGUGGCAGa-GCCuGCC-GCC-CUGC- -5'
30028 3' -57.2 NC_006273.1 + 141073 0.69 0.846979
Target:  5'- --gGCGCCGggcCUCGGcCGGggaGGGugGg -3'
miRNA:   3'- auaUGUGGCa--GAGCCuGCCg--CCCugC- -5'
30028 3' -57.2 NC_006273.1 + 61221 0.69 0.839246
Target:  5'- ---cCAgCGUCUCGaGGCGGCGGuGCa -3'
miRNA:   3'- auauGUgGCAGAGC-CUGCCGCCcUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.