miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30028 3' -57.2 NC_006273.1 + 1289 0.66 0.947721
Target:  5'- -cUGCuGCCG-CUCGGACGGCcGuACGg -3'
miRNA:   3'- auAUG-UGGCaGAGCCUGCCGcCcUGC- -5'
30028 3' -57.2 NC_006273.1 + 1739 0.66 0.934434
Target:  5'- -cUGCGCCGg--CGGugGGCcGGcACGa -3'
miRNA:   3'- auAUGUGGCagaGCCugCCGcCC-UGC- -5'
30028 3' -57.2 NC_006273.1 + 19195 0.68 0.853786
Target:  5'- aAUGCGgCGUCgaauuacCGGGCGGCGauagcagcgacgaGGACGa -3'
miRNA:   3'- aUAUGUgGCAGa------GCCUGCCGC-------------CCUGC- -5'
30028 3' -57.2 NC_006273.1 + 21539 0.66 0.92957
Target:  5'- --gGCGCuggCGUUUCgaGGACGGCGGcGCGg -3'
miRNA:   3'- auaUGUG---GCAGAG--CCUGCCGCCcUGC- -5'
30028 3' -57.2 NC_006273.1 + 30768 0.68 0.889439
Target:  5'- --gGCGCCGg--CGG-CGGUGGcGACGa -3'
miRNA:   3'- auaUGUGGCagaGCCuGCCGCC-CUGC- -5'
30028 3' -57.2 NC_006273.1 + 31353 0.73 0.619039
Target:  5'- aGUACGCCacGUCUCuGcGGCGGCuGGACGa -3'
miRNA:   3'- aUAUGUGG--CAGAG-C-CUGCCGcCCUGC- -5'
30028 3' -57.2 NC_006273.1 + 31664 0.7 0.780673
Target:  5'- --aGCugCGUCgucaaGGACGGCGuguuGGACGc -3'
miRNA:   3'- auaUGugGCAGag---CCUGCCGC----CCUGC- -5'
30028 3' -57.2 NC_006273.1 + 31758 0.68 0.889439
Target:  5'- --cGgGCCGUCgCGGACGaaaGUGGGGCc -3'
miRNA:   3'- auaUgUGGCAGaGCCUGC---CGCCCUGc -5'
30028 3' -57.2 NC_006273.1 + 32327 0.67 0.907931
Target:  5'- --aAUACUGUUgCuGAUGGUGGGACGa -3'
miRNA:   3'- auaUGUGGCAGaGcCUGCCGCCCUGC- -5'
30028 3' -57.2 NC_006273.1 + 33414 0.73 0.619039
Target:  5'- --cGCACCGcCUCGGGCGuCGGcGGCGc -3'
miRNA:   3'- auaUGUGGCaGAGCCUGCcGCC-CUGC- -5'
30028 3' -57.2 NC_006273.1 + 34524 0.68 0.882856
Target:  5'- aAUGCugCGgaUCGGGCGGCaaGGGcACGc -3'
miRNA:   3'- aUAUGugGCagAGCCUGCCG--CCC-UGC- -5'
30028 3' -57.2 NC_006273.1 + 38089 0.69 0.82327
Target:  5'- --cGCGCgGcCUCGG-CGGCGGG-CGc -3'
miRNA:   3'- auaUGUGgCaGAGCCuGCCGCCCuGC- -5'
30028 3' -57.2 NC_006273.1 + 38165 1.06 0.005966
Target:  5'- aUAUACACCGUCUCGGACGGCGGGACGc -3'
miRNA:   3'- -AUAUGUGGCAGAGCCUGCCGCCCUGC- -5'
30028 3' -57.2 NC_006273.1 + 40917 0.67 0.913667
Target:  5'- --cGCACCGUCugcgcUCGGGCGGaCGcGuGCGg -3'
miRNA:   3'- auaUGUGGCAG-----AGCCUGCC-GC-CcUGC- -5'
30028 3' -57.2 NC_006273.1 + 60242 0.69 0.806658
Target:  5'- cGUcCACCGcgaCUgGGcACGGCGGGACc -3'
miRNA:   3'- aUAuGUGGCa--GAgCC-UGCCGCCCUGc -5'
30028 3' -57.2 NC_006273.1 + 61221 0.69 0.839246
Target:  5'- ---cCAgCGUCUCGaGGCGGCGGuGCa -3'
miRNA:   3'- auauGUgGCAGAGC-CUGCCGCCcUGc -5'
30028 3' -57.2 NC_006273.1 + 63772 0.7 0.789467
Target:  5'- --cGCGCC-UCUCGGAggaCGGCGuGACGg -3'
miRNA:   3'- auaUGUGGcAGAGCCU---GCCGCcCUGC- -5'
30028 3' -57.2 NC_006273.1 + 71460 0.66 0.943508
Target:  5'- --aACGCCGcgaUCGaGGCGGCGGcGAUc -3'
miRNA:   3'- auaUGUGGCag-AGC-CUGCCGCC-CUGc -5'
30028 3' -57.2 NC_006273.1 + 72343 0.67 0.907931
Target:  5'- -cUGCACCGUCUCGcccgcgcuGugGGCgcugcuGGGuCGa -3'
miRNA:   3'- auAUGUGGCAGAGC--------CugCCG------CCCuGC- -5'
30028 3' -57.2 NC_006273.1 + 76533 0.68 0.882856
Target:  5'- cGU-CGCCG-CUCGGcGCGGCGcacgaGGACGu -3'
miRNA:   3'- aUAuGUGGCaGAGCC-UGCCGC-----CCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.