miRNA display CGI


Results 21 - 40 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30028 3' -57.2 NC_006273.1 + 79881 0.7 0.771758
Target:  5'- --aACGCCGUCcugacUGGACGGCGcagauugcaaGGGCGg -3'
miRNA:   3'- auaUGUGGCAGa----GCCUGCCGC----------CCUGC- -5'
30028 3' -57.2 NC_006273.1 + 85731 0.66 0.924488
Target:  5'- --aACGCCG---CGGGCGGCGuGGAgGg -3'
miRNA:   3'- auaUGUGGCagaGCCUGCCGC-CCUgC- -5'
30028 3' -57.2 NC_006273.1 + 94840 0.7 0.780673
Target:  5'- gGUGgGCCGgg-UGGACGGUggugGGGACGg -3'
miRNA:   3'- aUAUgUGGCagaGCCUGCCG----CCCUGC- -5'
30028 3' -57.2 NC_006273.1 + 96032 0.66 0.943508
Target:  5'- --gGCGCCaUCUUGGA-GGaGGGGCGa -3'
miRNA:   3'- auaUGUGGcAGAGCCUgCCgCCCUGC- -5'
30028 3' -57.2 NC_006273.1 + 101726 0.67 0.919187
Target:  5'- --gGCGCCGUggaaagugaggCUCaGACGGCGGucgccGGCGg -3'
miRNA:   3'- auaUGUGGCA-----------GAGcCUGCCGCC-----CUGC- -5'
30028 3' -57.2 NC_006273.1 + 115368 0.73 0.589756
Target:  5'- --aACACCGUCgcgUCGGACGcGaCGGuGACGg -3'
miRNA:   3'- auaUGUGGCAG---AGCCUGC-C-GCC-CUGC- -5'
30028 3' -57.2 NC_006273.1 + 116295 0.67 0.907931
Target:  5'- -uUGC-CCGUg-CGGACccGCGGGACGg -3'
miRNA:   3'- auAUGuGGCAgaGCCUGc-CGCCCUGC- -5'
30028 3' -57.2 NC_006273.1 + 117769 0.66 0.924488
Target:  5'- --gGCGCCGUa--GGACG-CGGGAUa -3'
miRNA:   3'- auaUGUGGCAgagCCUGCcGCCCUGc -5'
30028 3' -57.2 NC_006273.1 + 117877 0.67 0.895814
Target:  5'- --aGCACCGUCaCGGgggcaGCGGC-GGACa -3'
miRNA:   3'- auaUGUGGCAGaGCC-----UGCCGcCCUGc -5'
30028 3' -57.2 NC_006273.1 + 130966 0.69 0.846979
Target:  5'- --aACACCGUCaaCGG-CGGuCGGaGACGg -3'
miRNA:   3'- auaUGUGGCAGa-GCCuGCC-GCC-CUGC- -5'
30028 3' -57.2 NC_006273.1 + 130968 0.69 0.806658
Target:  5'- --gACGCaaaaGUgCUCGGacucGCGGCGGGugGc -3'
miRNA:   3'- auaUGUGg---CA-GAGCC----UGCCGCCCugC- -5'
30028 3' -57.2 NC_006273.1 + 131126 0.69 0.811705
Target:  5'- --cGCGCCGUgUCGucguaagcucauCGGCGGGAUGg -3'
miRNA:   3'- auaUGUGGCAgAGCcu----------GCCGCCCUGC- -5'
30028 3' -57.2 NC_006273.1 + 133281 0.7 0.771758
Target:  5'- gAUGcCGCCGUCUCGGGCGcaaGCGGcGGu- -3'
miRNA:   3'- aUAU-GUGGCAGAGCCUGC---CGCC-CUgc -5'
30028 3' -57.2 NC_006273.1 + 139659 0.68 0.882856
Target:  5'- --cACGuuGUCgCGGACGuggcuuGUGGGACGg -3'
miRNA:   3'- auaUGUggCAGaGCCUGC------CGCCCUGC- -5'
30028 3' -57.2 NC_006273.1 + 139819 0.66 0.926547
Target:  5'- --gGgGCCuguucccuucccggGUCUCGGACgagucgacacgccgGGUGGGACGg -3'
miRNA:   3'- auaUgUGG--------------CAGAGCCUG--------------CCGCCCUGC- -5'
30028 3' -57.2 NC_006273.1 + 140677 0.68 0.869084
Target:  5'- --aACGCCGcaggCGacGACGGCGGGugGu -3'
miRNA:   3'- auaUGUGGCaga-GC--CUGCCGCCCugC- -5'
30028 3' -57.2 NC_006273.1 + 141025 0.7 0.762728
Target:  5'- --gGCcCCGgauggugCUCcaGGGCGGUGGGACGg -3'
miRNA:   3'- auaUGuGGCa------GAG--CCUGCCGCCCUGC- -5'
30028 3' -57.2 NC_006273.1 + 141073 0.69 0.846979
Target:  5'- --gGCGCCGggcCUCGGcCGGggaGGGugGg -3'
miRNA:   3'- auaUGUGGCa--GAGCCuGCCg--CCCugC- -5'
30028 3' -57.2 NC_006273.1 + 141173 0.72 0.687353
Target:  5'- -cUGCGCCGgg--GGGCGGCGGGcACGc -3'
miRNA:   3'- auAUGUGGCagagCCUGCCGCCC-UGC- -5'
30028 3' -57.2 NC_006273.1 + 142280 0.72 0.658176
Target:  5'- cUGUGCcgaCGUCgugUGGGCGGCGuGGACGc -3'
miRNA:   3'- -AUAUGug-GCAGa--GCCUGCCGC-CCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.