miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30028 3' -57.2 NC_006273.1 + 139659 0.68 0.882856
Target:  5'- --cACGuuGUCgCGGACGuggcuuGUGGGACGg -3'
miRNA:   3'- auaUGUggCAGaGCCUGC------CGCCCUGC- -5'
30028 3' -57.2 NC_006273.1 + 131126 0.69 0.811705
Target:  5'- --cGCGCCGUgUCGucguaagcucauCGGCGGGAUGg -3'
miRNA:   3'- auaUGUGGCAgAGCcu----------GCCGCCCUGC- -5'
30028 3' -57.2 NC_006273.1 + 232982 0.69 0.82327
Target:  5'- --cGCGCgGcCUCGG-CGGCGGG-CGc -3'
miRNA:   3'- auaUGUGgCaGAGCCuGCCGCCCuGC- -5'
30028 3' -57.2 NC_006273.1 + 61221 0.69 0.839246
Target:  5'- ---cCAgCGUCUCGaGGCGGCGGuGCa -3'
miRNA:   3'- auauGUgGCAGAGC-CUGCCGCCcUGc -5'
30028 3' -57.2 NC_006273.1 + 130966 0.69 0.846979
Target:  5'- --aACACCGUCaaCGG-CGGuCGGaGACGg -3'
miRNA:   3'- auaUGUGGCAGa-GCCuGCC-GCC-CUGC- -5'
30028 3' -57.2 NC_006273.1 + 188368 0.68 0.853786
Target:  5'- --aACACCGcggUCauccaagUCGGGCGGCgucgGGGACGc -3'
miRNA:   3'- auaUGUGGC---AG-------AGCCUGCCG----CCCUGC- -5'
30028 3' -57.2 NC_006273.1 + 144420 0.68 0.854533
Target:  5'- --gGCGCCG-CggcggCGGACGGUucGGGugGc -3'
miRNA:   3'- auaUGUGGCaGa----GCCUGCCG--CCCugC- -5'
30028 3' -57.2 NC_006273.1 + 140677 0.68 0.869084
Target:  5'- --aACGCCGcaggCGacGACGGCGGGugGu -3'
miRNA:   3'- auaUGUGGCaga-GC--CUGCCGCCCugC- -5'
30028 3' -57.2 NC_006273.1 + 162230 0.68 0.876069
Target:  5'- ---cCGCCGUCUgcguguccucguUGGguggcaGCGGCGGGACu -3'
miRNA:   3'- auauGUGGCAGA------------GCC------UGCCGCCCUGc -5'
30028 3' -57.2 NC_006273.1 + 60242 0.69 0.806658
Target:  5'- cGUcCACCGcgaCUgGGcACGGCGGGACc -3'
miRNA:   3'- aUAuGUGGCa--GAgCC-UGCCGCCCUGc -5'
30028 3' -57.2 NC_006273.1 + 63772 0.7 0.789467
Target:  5'- --cGCGCC-UCUCGGAggaCGGCGuGACGg -3'
miRNA:   3'- auaUGUGGcAGAGCCU---GCCGCcCUGC- -5'
30028 3' -57.2 NC_006273.1 + 94840 0.7 0.780673
Target:  5'- gGUGgGCCGgg-UGGACGGUggugGGGACGg -3'
miRNA:   3'- aUAUgUGGCagaGCCUGCCG----CCCUGC- -5'
30028 3' -57.2 NC_006273.1 + 115368 0.73 0.589756
Target:  5'- --aACACCGUCgcgUCGGACGcGaCGGuGACGg -3'
miRNA:   3'- auaUGUGGCAG---AGCCUGC-C-GCC-CUGC- -5'
30028 3' -57.2 NC_006273.1 + 33414 0.73 0.619039
Target:  5'- --cGCACCGcCUCGGGCGuCGGcGGCGc -3'
miRNA:   3'- auaUGUGGCaGAGCCUGCcGCC-CUGC- -5'
30028 3' -57.2 NC_006273.1 + 31353 0.73 0.619039
Target:  5'- aGUACGCCacGUCUCuGcGGCGGCuGGACGa -3'
miRNA:   3'- aUAUGUGG--CAGAG-C-CUGCCGcCCUGC- -5'
30028 3' -57.2 NC_006273.1 + 142280 0.72 0.658176
Target:  5'- cUGUGCcgaCGUCgugUGGGCGGCGuGGACGc -3'
miRNA:   3'- -AUAUGug-GCAGa--GCCUGCCGC-CCUGC- -5'
30028 3' -57.2 NC_006273.1 + 189308 0.72 0.658176
Target:  5'- cGUACACCG-CggcaccugCGGcguCGGCGGGugGg -3'
miRNA:   3'- aUAUGUGGCaGa-------GCCu--GCCGCCCugC- -5'
30028 3' -57.2 NC_006273.1 + 133281 0.7 0.771758
Target:  5'- gAUGcCGCCGUCUCGGGCGcaaGCGGcGGu- -3'
miRNA:   3'- aUAU-GUGGCAGAGCCUGC---CGCC-CUgc -5'
30028 3' -57.2 NC_006273.1 + 79881 0.7 0.771758
Target:  5'- --aACGCCGUCcugacUGGACGGCGcagauugcaaGGGCGg -3'
miRNA:   3'- auaUGUGGCAGa----GCCUGCCGC----------CCUGC- -5'
30028 3' -57.2 NC_006273.1 + 208578 0.7 0.771758
Target:  5'- --aGCGCCGUCUUggaaaaGGACGGCcaGGAUGc -3'
miRNA:   3'- auaUGUGGCAGAG------CCUGCCGc-CCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.