miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30028 3' -57.2 NC_006273.1 + 204638 0.75 0.504022
Target:  5'- --gGCGCCGuUCUCGGGCaGCGaGGGCa -3'
miRNA:   3'- auaUGUGGC-AGAGCCUGcCGC-CCUGc -5'
30028 3' -57.2 NC_006273.1 + 148121 0.67 0.913104
Target:  5'- uUGUGCACCGacuccaugUCUCuGGcCGGCGccagaccGGACGa -3'
miRNA:   3'- -AUAUGUGGC--------AGAG-CCuGCCGC-------CCUGC- -5'
30028 3' -57.2 NC_006273.1 + 85731 0.66 0.924488
Target:  5'- --aACGCCG---CGGGCGGCGuGGAgGg -3'
miRNA:   3'- auaUGUGGCagaGCCUGCCGC-CCUgC- -5'
30028 3' -57.2 NC_006273.1 + 170869 0.66 0.947721
Target:  5'- --gACACCGaUgUCGaGcCGGCGGG-CGg -3'
miRNA:   3'- auaUGUGGC-AgAGC-CuGCCGCCCuGC- -5'
30028 3' -57.2 NC_006273.1 + 188406 0.7 0.771758
Target:  5'- gAUcCACCGcCUCgaccguggugaaGGGCGGUGGGugGa -3'
miRNA:   3'- aUAuGUGGCaGAG------------CCUGCCGCCCugC- -5'
30028 3' -57.2 NC_006273.1 + 228715 0.7 0.771758
Target:  5'- gGUGgGuuG-UUCGGAaaCGGCGGGACGg -3'
miRNA:   3'- aUAUgUggCaGAGCCU--GCCGCCCUGC- -5'
30028 3' -57.2 NC_006273.1 + 130968 0.69 0.806658
Target:  5'- --gACGCaaaaGUgCUCGGacucGCGGCGGGugGc -3'
miRNA:   3'- auaUGUGg---CA-GAGCC----UGCCGCCCugC- -5'
30028 3' -57.2 NC_006273.1 + 38089 0.69 0.82327
Target:  5'- --cGCGCgGcCUCGG-CGGCGGG-CGc -3'
miRNA:   3'- auaUGUGgCaGAGCCuGCCGCCCuGC- -5'
30028 3' -57.2 NC_006273.1 + 189941 0.68 0.861903
Target:  5'- --cACAgCCGUCugcagcucgUCGGcCGGCGuGGGCGg -3'
miRNA:   3'- auaUGU-GGCAG---------AGCCuGCCGC-CCUGC- -5'
30028 3' -57.2 NC_006273.1 + 72343 0.67 0.907931
Target:  5'- -cUGCACCGUCUCGcccgcgcuGugGGCgcugcuGGGuCGa -3'
miRNA:   3'- auAUGUGGCAGAGC--------CugCCG------CCCuGC- -5'
30028 3' -57.2 NC_006273.1 + 178801 0.68 0.889439
Target:  5'- -cUACcugaCGUCcaaagguggaUCGGGCGGCGGcGGCGg -3'
miRNA:   3'- auAUGug--GCAG----------AGCCUGCCGCC-CUGC- -5'
30028 3' -57.2 NC_006273.1 + 19195 0.68 0.853786
Target:  5'- aAUGCGgCGUCgaauuacCGGGCGGCGauagcagcgacgaGGACGa -3'
miRNA:   3'- aUAUGUgGCAGa------GCCUGCCGC-------------CCUGC- -5'
30028 3' -57.2 NC_006273.1 + 157373 0.74 0.570364
Target:  5'- --gGCugCGUCgccUGcGACGGCGGGugGa -3'
miRNA:   3'- auaUGugGCAGa--GC-CUGCCGCCCugC- -5'
30028 3' -57.2 NC_006273.1 + 31758 0.68 0.889439
Target:  5'- --cGgGCCGUCgCGGACGaaaGUGGGGCc -3'
miRNA:   3'- auaUgUGGCAGaGCCUGC---CGCCCUGc -5'
30028 3' -57.2 NC_006273.1 + 141173 0.72 0.687353
Target:  5'- -cUGCGCCGgg--GGGCGGCGGGcACGc -3'
miRNA:   3'- auAUGUGGCagagCCUGCCGCCC-UGC- -5'
30028 3' -57.2 NC_006273.1 + 141073 0.69 0.846979
Target:  5'- --gGCGCCGggcCUCGGcCGGggaGGGugGg -3'
miRNA:   3'- auaUGUGGCa--GAGCCuGCCg--CCCugC- -5'
30028 3' -57.2 NC_006273.1 + 197182 0.68 0.889439
Target:  5'- ---cCGCCGUCUcCGGaugagcggccGCGGCGcGGGCu -3'
miRNA:   3'- auauGUGGCAGA-GCC----------UGCCGC-CCUGc -5'
30028 3' -57.2 NC_006273.1 + 187188 0.67 0.919187
Target:  5'- gUGUGgGCCGgccCUCGGGguGCGGGugGc -3'
miRNA:   3'- -AUAUgUGGCa--GAGCCUgcCGCCCugC- -5'
30028 3' -57.2 NC_006273.1 + 141025 0.7 0.762728
Target:  5'- --gGCcCCGgauggugCUCcaGGGCGGUGGGACGg -3'
miRNA:   3'- auaUGuGGCa------GAG--CCUGCCGCCCUGC- -5'
30028 3' -57.2 NC_006273.1 + 31664 0.7 0.780673
Target:  5'- --aGCugCGUCgucaaGGACGGCGuguuGGACGc -3'
miRNA:   3'- auaUGugGCAGag---CCUGCCGC----CCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.