miRNA display CGI


Results 41 - 60 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30028 3' -57.2 NC_006273.1 + 94840 0.7 0.780673
Target:  5'- gGUGgGCCGgg-UGGACGGUggugGGGACGg -3'
miRNA:   3'- aUAUgUGGCagaGCCUGCCG----CCCUGC- -5'
30028 3' -57.2 NC_006273.1 + 208578 0.7 0.771758
Target:  5'- --aGCGCCGUCUUggaaaaGGACGGCcaGGAUGc -3'
miRNA:   3'- auaUGUGGCAGAG------CCUGCCGc-CCUGC- -5'
30028 3' -57.2 NC_006273.1 + 133281 0.7 0.771758
Target:  5'- gAUGcCGCCGUCUCGGGCGcaaGCGGcGGu- -3'
miRNA:   3'- aUAU-GUGGCAGAGCCUGC---CGCC-CUgc -5'
30028 3' -57.2 NC_006273.1 + 189308 0.72 0.658176
Target:  5'- cGUACACCG-CggcaccugCGGcguCGGCGGGugGg -3'
miRNA:   3'- aUAUGUGGCaGa-------GCCu--GCCGCCCugC- -5'
30028 3' -57.2 NC_006273.1 + 142280 0.72 0.658176
Target:  5'- cUGUGCcgaCGUCgugUGGGCGGCGuGGACGc -3'
miRNA:   3'- -AUAUGug-GCAGa--GCCUGCCGC-CCUGC- -5'
30028 3' -57.2 NC_006273.1 + 31353 0.73 0.619039
Target:  5'- aGUACGCCacGUCUCuGcGGCGGCuGGACGa -3'
miRNA:   3'- aUAUGUGG--CAGAG-C-CUGCCGcCCUGC- -5'
30028 3' -57.2 NC_006273.1 + 188368 0.68 0.853786
Target:  5'- --aACACCGcggUCauccaagUCGGGCGGCgucgGGGACGc -3'
miRNA:   3'- auaUGUGGC---AG-------AGCCUGCCG----CCCUGC- -5'
30028 3' -57.2 NC_006273.1 + 144420 0.68 0.854533
Target:  5'- --gGCGCCG-CggcggCGGACGGUucGGGugGc -3'
miRNA:   3'- auaUGUGGCaGa----GCCUGCCG--CCCugC- -5'
30028 3' -57.2 NC_006273.1 + 21539 0.66 0.92957
Target:  5'- --gGCGCuggCGUUUCgaGGACGGCGGcGCGg -3'
miRNA:   3'- auaUGUG---GCAGAG--CCUGCCGCCcUGC- -5'
30028 3' -57.2 NC_006273.1 + 101726 0.67 0.919187
Target:  5'- --gGCGCCGUggaaagugaggCUCaGACGGCGGucgccGGCGg -3'
miRNA:   3'- auaUGUGGCA-----------GAGcCUGCCGCC-----CUGC- -5'
30028 3' -57.2 NC_006273.1 + 40917 0.67 0.913667
Target:  5'- --cGCACCGUCugcgcUCGGGCGGaCGcGuGCGg -3'
miRNA:   3'- auaUGUGGCAG-----AGCCUGCC-GC-CcUGC- -5'
30028 3' -57.2 NC_006273.1 + 116295 0.67 0.907931
Target:  5'- -uUGC-CCGUg-CGGACccGCGGGACGg -3'
miRNA:   3'- auAUGuGGCAgaGCCUGc-CGCCCUGC- -5'
30028 3' -57.2 NC_006273.1 + 32327 0.67 0.907931
Target:  5'- --aAUACUGUUgCuGAUGGUGGGACGa -3'
miRNA:   3'- auaUGUGGCAGaGcCUGCCGCCCUGC- -5'
30028 3' -57.2 NC_006273.1 + 117877 0.67 0.895814
Target:  5'- --aGCACCGUCaCGGgggcaGCGGC-GGACa -3'
miRNA:   3'- auaUGUGGCAGaGCC-----UGCCGcCCUGc -5'
30028 3' -57.2 NC_006273.1 + 30768 0.68 0.889439
Target:  5'- --gGCGCCGg--CGG-CGGUGGcGACGa -3'
miRNA:   3'- auaUGUGGCagaGCCuGCCGCC-CUGC- -5'
30028 3' -57.2 NC_006273.1 + 34524 0.68 0.882856
Target:  5'- aAUGCugCGgaUCGGGCGGCaaGGGcACGc -3'
miRNA:   3'- aUAUGugGCagAGCCUGCCG--CCC-UGC- -5'
30028 3' -57.2 NC_006273.1 + 163062 0.68 0.882856
Target:  5'- gGUGCAggaGUC-CGaGGCGGCGGcGACGg -3'
miRNA:   3'- aUAUGUgg-CAGaGC-CUGCCGCC-CUGC- -5'
30028 3' -57.2 NC_006273.1 + 139659 0.68 0.882856
Target:  5'- --cACGuuGUCgCGGACGuggcuuGUGGGACGg -3'
miRNA:   3'- auaUGUggCAGaGCCUGC------CGCCCUGC- -5'
30028 3' -57.2 NC_006273.1 + 162230 0.68 0.876069
Target:  5'- ---cCGCCGUCUgcguguccucguUGGguggcaGCGGCGGGACu -3'
miRNA:   3'- auauGUGGCAGA------------GCC------UGCCGCCCUGc -5'
30028 3' -57.2 NC_006273.1 + 140677 0.68 0.869084
Target:  5'- --aACGCCGcaggCGacGACGGCGGGugGu -3'
miRNA:   3'- auaUGUGGCaga-GC--CUGCCGCCCugC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.