miRNA display CGI


Results 1 - 20 of 234 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30028 5' -61.6 NC_006273.1 + 19242 0.66 0.819367
Target:  5'- --aGCGGCCGCcc--CCGGAGAauugccaaccguauaGGCg -3'
miRNA:   3'- cggCGCCGGCGaguaGGCCUCUg--------------CCG- -5'
30028 5' -61.6 NC_006273.1 + 68065 0.66 0.818569
Target:  5'- cGCCGUGGCCGCcgcugCcgCCGcuG-UGGCc -3'
miRNA:   3'- -CGGCGCCGGCGa----GuaGGCcuCuGCCG- -5'
30028 5' -61.6 NC_006273.1 + 165950 0.66 0.818569
Target:  5'- cGCCGCuacagcggcGCCGC-CAUgCCaGGGGuCGGCc -3'
miRNA:   3'- -CGGCGc--------CGGCGaGUA-GG-CCUCuGCCG- -5'
30028 5' -61.6 NC_006273.1 + 143134 0.66 0.818569
Target:  5'- cGCUguGUGGCCGuCUU-UCaGGAGACGGg -3'
miRNA:   3'- -CGG--CGCCGGC-GAGuAGgCCUCUGCCg -5'
30028 5' -61.6 NC_006273.1 + 46330 0.66 0.818569
Target:  5'- gGCCGCcuacGCCGCcgGUCCGGGcccccaccacGCGGCu -3'
miRNA:   3'- -CGGCGc---CGGCGagUAGGCCUc---------UGCCG- -5'
30028 5' -61.6 NC_006273.1 + 167271 0.66 0.818569
Target:  5'- cGUgGCGGUgGCgggCAUgaCGGGGuuuGCGGCg -3'
miRNA:   3'- -CGgCGCCGgCGa--GUAg-GCCUC---UGCCG- -5'
30028 5' -61.6 NC_006273.1 + 196329 0.66 0.818569
Target:  5'- cCCGCGGCCGac---CCGacGGugGGCg -3'
miRNA:   3'- cGGCGCCGGCgaguaGGCc-UCugCCG- -5'
30028 5' -61.6 NC_006273.1 + 1436 0.66 0.818569
Target:  5'- cCCGCGGCCGac---CCGacGGugGGCg -3'
miRNA:   3'- cGGCGCCGGCgaguaGGCc-UCugCCG- -5'
30028 5' -61.6 NC_006273.1 + 140859 0.66 0.818569
Target:  5'- -gCGCGGCCGCUUcUCgGGGcGCGa- -3'
miRNA:   3'- cgGCGCCGGCGAGuAGgCCUcUGCcg -5'
30028 5' -61.6 NC_006273.1 + 17755 0.66 0.818569
Target:  5'- -gCGCaGCgCGCuUUAUCCGacucgcugucGAGACGGCu -3'
miRNA:   3'- cgGCGcCG-GCG-AGUAGGC----------CUCUGCCG- -5'
30028 5' -61.6 NC_006273.1 + 45912 0.66 0.813755
Target:  5'- cGCCGaGGCCGCaagCgAUCCGacgagacuucgucgcGAGGcCGGCu -3'
miRNA:   3'- -CGGCgCCGGCGa--G-UAGGC---------------CUCU-GCCG- -5'
30028 5' -61.6 NC_006273.1 + 34199 0.66 0.810518
Target:  5'- aCgGCGG-CGCggugCGUCCGGuacuuGACGGg -3'
miRNA:   3'- cGgCGCCgGCGa---GUAGGCCu----CUGCCg -5'
30028 5' -61.6 NC_006273.1 + 1717 0.66 0.810518
Target:  5'- cGCCGCGGCgGUggCGaCUGGGccGACaGCg -3'
miRNA:   3'- -CGGCGCCGgCGa-GUaGGCCU--CUGcCG- -5'
30028 5' -61.6 NC_006273.1 + 232936 0.66 0.810518
Target:  5'- -gCGCGGCCGCUCccacugcucgcgGUCCaGcucGGGCaGCa -3'
miRNA:   3'- cgGCGCCGGCGAG------------UAGGcC---UCUGcCG- -5'
30028 5' -61.6 NC_006273.1 + 156308 0.66 0.810518
Target:  5'- cCCGCGGCUGaccgUCGUCCGGuaaaGGa -3'
miRNA:   3'- cGGCGCCGGCg---AGUAGGCCucugCCg -5'
30028 5' -61.6 NC_006273.1 + 126999 0.66 0.810518
Target:  5'- aCCGCGGUgGCggccggCAUCaGGAGAaacgcCGGUc -3'
miRNA:   3'- cGGCGCCGgCGa-----GUAGgCCUCU-----GCCG- -5'
30028 5' -61.6 NC_006273.1 + 128720 0.66 0.810518
Target:  5'- uCgGUGGCCGCU---UCGGccAGACGGUg -3'
miRNA:   3'- cGgCGCCGGCGAguaGGCC--UCUGCCG- -5'
30028 5' -61.6 NC_006273.1 + 222380 0.66 0.810518
Target:  5'- -aCuCGGaaauCCGcCUUGUCCGGAGACGGa -3'
miRNA:   3'- cgGcGCC----GGC-GAGUAGGCCUCUGCCg -5'
30028 5' -61.6 NC_006273.1 + 227779 0.66 0.810518
Target:  5'- cGUCGcCGGCCuC-CAggaGGAGAUGGCg -3'
miRNA:   3'- -CGGC-GCCGGcGaGUaggCCUCUGCCG- -5'
30028 5' -61.6 NC_006273.1 + 38043 0.66 0.810518
Target:  5'- -gCGCGGCCGCUCccacugcucgcgGUCCaGcucGGGCaGCa -3'
miRNA:   3'- cgGCGCCGGCGAG------------UAGGcC---UCUGcCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.