miRNA display CGI


Results 1 - 20 of 234 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30028 5' -61.6 NC_006273.1 + 194910 0.66 0.794005
Target:  5'- gGCgGCGGUCGgggugUGUCgGGGGcGCGGCg -3'
miRNA:   3'- -CGgCGCCGGCga---GUAGgCCUC-UGCCG- -5'
30028 5' -61.6 NC_006273.1 + 19242 0.66 0.819367
Target:  5'- --aGCGGCCGCcc--CCGGAGAauugccaaccguauaGGCg -3'
miRNA:   3'- cggCGCCGGCGaguaGGCCUCUg--------------CCG- -5'
30028 5' -61.6 NC_006273.1 + 137188 0.66 0.792325
Target:  5'- cGCCGCuGCCGCUCAgcgagcucgucgCCagcgcGAGcgcuCGGCg -3'
miRNA:   3'- -CGGCGcCGGCGAGUa-----------GGc----CUCu---GCCG- -5'
30028 5' -61.6 NC_006273.1 + 209453 0.66 0.785557
Target:  5'- aGCCaG-GGCCGCuUCGUggaaaUGcGAGACGGCu -3'
miRNA:   3'- -CGG-CgCCGGCG-AGUAg----GC-CUCUGCCG- -5'
30028 5' -61.6 NC_006273.1 + 150934 0.66 0.784706
Target:  5'- uGCCGCagcgguguuuGaGCCGCagAUCCGaGAgccucaccugcguGACGGCg -3'
miRNA:   3'- -CGGCG----------C-CGGCGagUAGGC-CU-------------CUGCCG- -5'
30028 5' -61.6 NC_006273.1 + 120292 0.66 0.794005
Target:  5'- aUCGCGGCCGCU--UCCGacGAgGGUc -3'
miRNA:   3'- cGGCGCCGGCGAguAGGCcuCUgCCG- -5'
30028 5' -61.6 NC_006273.1 + 136041 0.66 0.774399
Target:  5'- uCCGCGGgCCGCguucCGagCGGAGAugaggacgacgcacCGGCc -3'
miRNA:   3'- cGGCGCC-GGCGa---GUagGCCUCU--------------GCCG- -5'
30028 5' -61.6 NC_006273.1 + 8342 0.66 0.794005
Target:  5'- aGCCGcCGuGCCGC-CggUUGGuggcuGGCGGCa -3'
miRNA:   3'- -CGGC-GC-CGGCGaGuaGGCCu----CUGCCG- -5'
30028 5' -61.6 NC_006273.1 + 234675 0.66 0.794005
Target:  5'- cGCCGCcuuggGGCCGUgcaGUCUGGAa--GGCc -3'
miRNA:   3'- -CGGCG-----CCGGCGag-UAGGCCUcugCCG- -5'
30028 5' -61.6 NC_006273.1 + 87751 0.66 0.785557
Target:  5'- uGCgGCGGCCGUU-GUCgCGGcguuugcuGGCGGUu -3'
miRNA:   3'- -CGgCGCCGGCGAgUAG-GCCu-------CUGCCG- -5'
30028 5' -61.6 NC_006273.1 + 211157 0.66 0.776128
Target:  5'- cCCGCGGUUcuaacagGCUUgAUUggUGGAGACGGCc -3'
miRNA:   3'- cGGCGCCGG-------CGAG-UAG--GCCUCUGCCG- -5'
30028 5' -61.6 NC_006273.1 + 216133 0.66 0.785557
Target:  5'- cGCCuauaCGGuuGg-CAauucUCCGGGGGCGGCc -3'
miRNA:   3'- -CGGc---GCCggCgaGU----AGGCCUCUGCCG- -5'
30028 5' -61.6 NC_006273.1 + 73416 0.66 0.802327
Target:  5'- aCUGCGGUCGCgauggcCCGGAG-CGcGCu -3'
miRNA:   3'- cGGCGCCGGCGagua--GGCCUCuGC-CG- -5'
30028 5' -61.6 NC_006273.1 + 216190 0.66 0.782144
Target:  5'- cGCCGCccgguaauucgacGCCGCauUCGUUguaCGGAGcGCGGCa -3'
miRNA:   3'- -CGGCGc------------CGGCG--AGUAG---GCCUC-UGCCG- -5'
30028 5' -61.6 NC_006273.1 + 219744 0.66 0.776991
Target:  5'- aGCCGCGGgcCCGUaUCGUCCuGAugaccaGCGGCc -3'
miRNA:   3'- -CGGCGCC--GGCG-AGUAGGcCUc-----UGCCG- -5'
30028 5' -61.6 NC_006273.1 + 114901 0.66 0.794005
Target:  5'- -gCGCGGCCGg-CA-CCGGuuuCGGCa -3'
miRNA:   3'- cgGCGCCGGCgaGUaGGCCucuGCCG- -5'
30028 5' -61.6 NC_006273.1 + 87414 0.66 0.794005
Target:  5'- cGCCGCcGCCgGCUCcUCCgccucGGGcGACGGg -3'
miRNA:   3'- -CGGCGcCGG-CGAGuAGG-----CCU-CUGCCg -5'
30028 5' -61.6 NC_006273.1 + 33301 0.66 0.774399
Target:  5'- uGgCGUGGuuGCUCAgcucggcgUCCGaGAGcgccgagcugaacuGCGGCa -3'
miRNA:   3'- -CgGCGCCggCGAGU--------AGGC-CUC--------------UGCCG- -5'
30028 5' -61.6 NC_006273.1 + 70952 0.66 0.802327
Target:  5'- gGCCGCGGCCGCaga--CGacGACGGa -3'
miRNA:   3'- -CGGCGCCGGCGaguagGCcuCUGCCg -5'
30028 5' -61.6 NC_006273.1 + 163602 0.66 0.801501
Target:  5'- cGCCGCGGCUGCcaguaacucuuccUCGUCUucuu-CGGCu -3'
miRNA:   3'- -CGGCGCCGGCG-------------AGUAGGccucuGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.