miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30031 3' -60.7 NC_006273.1 + 101704 0.66 0.804301
Target:  5'- cGCUGCcGGGgGgCG-GGUCACCggcgCCg -3'
miRNA:   3'- uUGACGaCCCgUgGCaCCGGUGGa---GG- -5'
30031 3' -60.7 NC_006273.1 + 125094 0.66 0.804301
Target:  5'- cGCUGCggaaUGGGCACaacGGCCGCUaCUa -3'
miRNA:   3'- uUGACG----ACCCGUGgcaCCGGUGGaGG- -5'
30031 3' -60.7 NC_006273.1 + 150767 0.66 0.804301
Target:  5'- cAGCcGCcGGGCGCUGUGGUgcagcaGCCggCCg -3'
miRNA:   3'- -UUGaCGaCCCGUGGCACCGg-----UGGa-GG- -5'
30031 3' -60.7 NC_006273.1 + 62202 0.66 0.804301
Target:  5'- cAAUUGUc--GCGCCGUGGCCgaaCUCCu -3'
miRNA:   3'- -UUGACGaccCGUGGCACCGGug-GAGG- -5'
30031 3' -60.7 NC_006273.1 + 114450 0.66 0.804301
Target:  5'- cACcgGCgGcGGCGCCaUGGCgagCGCCUCCa -3'
miRNA:   3'- uUGa-CGaC-CCGUGGcACCG---GUGGAGG- -5'
30031 3' -60.7 NC_006273.1 + 206187 0.66 0.803453
Target:  5'- cGCUGCUugGGGCauaaaacACCGacGCUACUUCCc -3'
miRNA:   3'- uUGACGA--CCCG-------UGGCacCGGUGGAGG- -5'
30031 3' -60.7 NC_006273.1 + 214750 0.66 0.795759
Target:  5'- -uCUGCcGGaGCACCGUGGgUGCCg-- -3'
miRNA:   3'- uuGACGaCC-CGUGGCACCgGUGGagg -5'
30031 3' -60.7 NC_006273.1 + 962 0.66 0.794897
Target:  5'- gGGCgUGCUGGGCGCCG-GcGCCgguaacgggaguuACCUg- -3'
miRNA:   3'- -UUG-ACGACCCGUGGCaC-CGG-------------UGGAgg -5'
30031 3' -60.7 NC_006273.1 + 148823 0.66 0.794897
Target:  5'- cGGCUGCaGGGCuuGCUGUgcaaccauauagcGGuCCACCgUCCg -3'
miRNA:   3'- -UUGACGaCCCG--UGGCA-------------CC-GGUGG-AGG- -5'
30031 3' -60.7 NC_006273.1 + 13590 0.66 0.786209
Target:  5'- gGGCgGCccGGGcCGCCGUgcuggagGGCCGCC-CCa -3'
miRNA:   3'- -UUGaCGa-CCC-GUGGCA-------CCGGUGGaGG- -5'
30031 3' -60.7 NC_006273.1 + 72244 0.66 0.77828
Target:  5'- cGACUGCgGuGGUGCCuccGCCGCCUCa -3'
miRNA:   3'- -UUGACGaC-CCGUGGcacCGGUGGAGg -5'
30031 3' -60.7 NC_006273.1 + 193866 0.66 0.77828
Target:  5'- -cCUGCUG-GCGCCG-GcGCUGCCaUCCu -3'
miRNA:   3'- uuGACGACcCGUGGCaC-CGGUGG-AGG- -5'
30031 3' -60.7 NC_006273.1 + 142811 0.66 0.769358
Target:  5'- cGCUGgUGGGCacgggcgugcACCGcGGUCugCUCa -3'
miRNA:   3'- uUGACgACCCG----------UGGCaCCGGugGAGg -5'
30031 3' -60.7 NC_006273.1 + 18505 0.66 0.769358
Target:  5'- --aUGCUGGGCuccAUCGagGGCCugCgcgCCu -3'
miRNA:   3'- uugACGACCCG---UGGCa-CCGGugGa--GG- -5'
30031 3' -60.7 NC_006273.1 + 206247 0.66 0.769358
Target:  5'- cGCUGCcaa-CGCCGUcaaGGCCGCCUCUu -3'
miRNA:   3'- uUGACGacccGUGGCA---CCGGUGGAGG- -5'
30031 3' -60.7 NC_006273.1 + 162198 0.67 0.751188
Target:  5'- aGGCggugGUUGcGGCGCCGcGucuaCCGCCUCCg -3'
miRNA:   3'- -UUGa---CGAC-CCGUGGCaCc---GGUGGAGG- -5'
30031 3' -60.7 NC_006273.1 + 27122 0.67 0.751188
Target:  5'- ---aGCUGGGgaACag-GGCUACCUCCc -3'
miRNA:   3'- uugaCGACCCg-UGgcaCCGGUGGAGG- -5'
30031 3' -60.7 NC_006273.1 + 71087 0.67 0.751188
Target:  5'- uGCUGUgGGGCGCCGacgcGCaCACCUgCg -3'
miRNA:   3'- uUGACGaCCCGUGGCac--CG-GUGGAgG- -5'
30031 3' -60.7 NC_006273.1 + 161641 0.67 0.741956
Target:  5'- cGCUGCcGGGCcucgGCCGccGCCGCCaCCc -3'
miRNA:   3'- uUGACGaCCCG----UGGCacCGGUGGaGG- -5'
30031 3' -60.7 NC_006273.1 + 82840 0.67 0.736375
Target:  5'- uGCUGCagguggccgagcgccUGGGCGCCGUGcGCauaGCCa-- -3'
miRNA:   3'- uUGACG---------------ACCCGUGGCAC-CGg--UGGagg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.