miRNA display CGI


Results 1 - 20 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30031 5' -54 NC_006273.1 + 31963 0.66 0.984377
Target:  5'- cUCGuaGGCGAGuUUAUGGUGCGCGAUc- -3'
miRNA:   3'- -AGC--CUGUUCuAGUGCCGCGCGUUGua -5'
30031 5' -54 NC_006273.1 + 113644 0.66 0.984377
Target:  5'- gUCGGGCAAGcagauGUgGCaGGCGCGUcuCAc -3'
miRNA:   3'- -AGCCUGUUC-----UAgUG-CCGCGCGuuGUa -5'
30031 5' -54 NC_006273.1 + 175647 0.66 0.984377
Target:  5'- gCGGcCGAGGagACGGCGCGUuuUGUg -3'
miRNA:   3'- aGCCuGUUCUagUGCCGCGCGuuGUA- -5'
30031 5' -54 NC_006273.1 + 82044 0.66 0.984377
Target:  5'- cUCGGACGAa---GCGGCaGCgGCGGCAg -3'
miRNA:   3'- -AGCCUGUUcuagUGCCG-CG-CGUUGUa -5'
30031 5' -54 NC_006273.1 + 50157 0.66 0.984377
Target:  5'- uUCGGAgAAc--UACGGCGCgGCGGCAc -3'
miRNA:   3'- -AGCCUgUUcuaGUGCCGCG-CGUUGUa -5'
30031 5' -54 NC_006273.1 + 51628 0.66 0.984377
Target:  5'- aCGG-CAGGcUCgGCGGCGCGgaCAGCAc -3'
miRNA:   3'- aGCCuGUUCuAG-UGCCGCGC--GUUGUa -5'
30031 5' -54 NC_006273.1 + 105495 0.66 0.984377
Target:  5'- gUCGGuGCAcguAGAgcaGCGGCcCGCGACAa -3'
miRNA:   3'- -AGCC-UGU---UCUag-UGCCGcGCGUUGUa -5'
30031 5' -54 NC_006273.1 + 71403 0.66 0.984377
Target:  5'- gUCGGguGCGcGA-CACGGCuaucauGCGCAACAg -3'
miRNA:   3'- -AGCC--UGUuCUaGUGCCG------CGCGUUGUa -5'
30031 5' -54 NC_006273.1 + 121479 0.66 0.984377
Target:  5'- gUGGACA----CACGGUGaCGCGGCAg -3'
miRNA:   3'- aGCCUGUucuaGUGCCGC-GCGUUGUa -5'
30031 5' -54 NC_006273.1 + 144432 0.66 0.982504
Target:  5'- gCGGACGguucGGGUgGCGGCGgcuCGCAcuACAc -3'
miRNA:   3'- aGCCUGU----UCUAgUGCCGC---GCGU--UGUa -5'
30031 5' -54 NC_006273.1 + 70685 0.66 0.982504
Target:  5'- gCGGugGAG-----GGCGCGCGGCAa -3'
miRNA:   3'- aGCCugUUCuagugCCGCGCGUUGUa -5'
30031 5' -54 NC_006273.1 + 165065 0.66 0.982504
Target:  5'- aCGGGC-AGAcgCACGGCGCGg----- -3'
miRNA:   3'- aGCCUGuUCUa-GUGCCGCGCguugua -5'
30031 5' -54 NC_006273.1 + 58860 0.66 0.982504
Target:  5'- aUCGGGacuCAAG--CACGGCG-GCAGCAc -3'
miRNA:   3'- -AGCCU---GUUCuaGUGCCGCgCGUUGUa -5'
30031 5' -54 NC_006273.1 + 61847 0.66 0.982504
Target:  5'- aCGGuACAG----ACGGCGCGCGACc- -3'
miRNA:   3'- aGCC-UGUUcuagUGCCGCGCGUUGua -5'
30031 5' -54 NC_006273.1 + 84267 0.66 0.982504
Target:  5'- aUGGagccGCAAGugcucgacuUUACGGUGCGCGGCGa -3'
miRNA:   3'- aGCC----UGUUCu--------AGUGCCGCGCGUUGUa -5'
30031 5' -54 NC_006273.1 + 146316 0.66 0.982504
Target:  5'- gCGGGCAAGggCAacGCGgGUAGCGUg -3'
miRNA:   3'- aGCCUGUUCuaGUgcCGCgCGUUGUA- -5'
30031 5' -54 NC_006273.1 + 144523 0.66 0.982504
Target:  5'- --cGACGAGGUCuCGcuggauGCGCGCAGCGc -3'
miRNA:   3'- agcCUGUUCUAGuGC------CGCGCGUUGUa -5'
30031 5' -54 NC_006273.1 + 91218 0.66 0.982504
Target:  5'- -aGGGCcucggcGAUCuCGGCGCGCGAgGc -3'
miRNA:   3'- agCCUGuu----CUAGuGCCGCGCGUUgUa -5'
30031 5' -54 NC_006273.1 + 73178 0.66 0.980465
Target:  5'- gCGGAgGcgguAGA-CGCGGCGcCGCAACc- -3'
miRNA:   3'- aGCCUgU----UCUaGUGCCGC-GCGUUGua -5'
30031 5' -54 NC_006273.1 + 145770 0.66 0.980465
Target:  5'- aCGGGCGAGGaUACcuuuaGCGCGCAcgGCAa -3'
miRNA:   3'- aGCCUGUUCUaGUGc----CGCGCGU--UGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.