miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30041 3' -52.2 NC_006273.1 + 187308 0.66 0.991376
Target:  5'- -cGggGCgGCUGCUccagguccgcGGAGCuaaUGCCg -3'
miRNA:   3'- uuCuuCGaCGACGA----------CUUCGugaACGG- -5'
30041 3' -52.2 NC_006273.1 + 154943 0.66 0.991376
Target:  5'- gGAGAuGUUGCgugaGCUGgcGCGCguugagcUGCCc -3'
miRNA:   3'- -UUCUuCGACGa---CGACuuCGUGa------ACGG- -5'
30041 3' -52.2 NC_006273.1 + 148650 0.66 0.991019
Target:  5'- uGGAcGCgGCgGCUGAGGUGCUcucguggugcggccUGCCc -3'
miRNA:   3'- uUCUuCGaCGaCGACUUCGUGA--------------ACGG- -5'
30041 3' -52.2 NC_006273.1 + 132097 0.66 0.99014
Target:  5'- ---uGGCaccGCUGCUGGAGCGaccgcUGCCc -3'
miRNA:   3'- uucuUCGa--CGACGACUUCGUga---ACGG- -5'
30041 3' -52.2 NC_006273.1 + 110909 0.66 0.99014
Target:  5'- cAGGAGCUGCUgaugcgGCUGGAcCGCgaGCg -3'
miRNA:   3'- uUCUUCGACGA------CGACUUcGUGaaCGg -5'
30041 3' -52.2 NC_006273.1 + 164267 0.66 0.99014
Target:  5'- -cGAGGCgaaacUGgUGCUGGcGGCGCcgggUGCCa -3'
miRNA:   3'- uuCUUCG-----ACgACGACU-UCGUGa---ACGG- -5'
30041 3' -52.2 NC_006273.1 + 61654 0.66 0.99014
Target:  5'- --aGAGCaGCUGCg--GGCACggGCCa -3'
miRNA:   3'- uucUUCGaCGACGacuUCGUGaaCGG- -5'
30041 3' -52.2 NC_006273.1 + 55386 0.66 0.990009
Target:  5'- cAGgcGCUGCUGC-GAcuccaccGGCACg-GCCc -3'
miRNA:   3'- uUCuuCGACGACGaCU-------UCGUGaaCGG- -5'
30041 3' -52.2 NC_006273.1 + 196805 0.66 0.988769
Target:  5'- ----uGCUGCgGCUGGcuGGCGCUgggcgcggugcUGCCc -3'
miRNA:   3'- uucuuCGACGaCGACU--UCGUGA-----------ACGG- -5'
30041 3' -52.2 NC_006273.1 + 147240 0.66 0.988769
Target:  5'- uGGAug--GCUGC-GAGGCGCUgGCCg -3'
miRNA:   3'- uUCUucgaCGACGaCUUCGUGAaCGG- -5'
30041 3' -52.2 NC_006273.1 + 1913 0.66 0.988769
Target:  5'- ----uGCUGCgGCUGGcuGGCGCUgggcgcggugcUGCCc -3'
miRNA:   3'- uucuuCGACGaCGACU--UCGUGA-----------ACGG- -5'
30041 3' -52.2 NC_006273.1 + 32030 0.66 0.987254
Target:  5'- -cGAugguGCUGCUGUUGGGauacGUGCUgGCCa -3'
miRNA:   3'- uuCUu---CGACGACGACUU----CGUGAaCGG- -5'
30041 3' -52.2 NC_006273.1 + 119455 0.66 0.987254
Target:  5'- uGAGcGGCgGaCUGCUGAcGCGCUUugugcagcGCCa -3'
miRNA:   3'- -UUCuUCGaC-GACGACUuCGUGAA--------CGG- -5'
30041 3' -52.2 NC_006273.1 + 161407 0.66 0.985587
Target:  5'- cGAGAAuCUGCUGCgcGAGCugUacGCCa -3'
miRNA:   3'- -UUCUUcGACGACGacUUCGugAa-CGG- -5'
30041 3' -52.2 NC_006273.1 + 85861 0.67 0.983757
Target:  5'- uGAGua-CUGCUGUUGcuGCugUUGCUg -3'
miRNA:   3'- -UUCuucGACGACGACuuCGugAACGG- -5'
30041 3' -52.2 NC_006273.1 + 117339 0.67 0.983757
Target:  5'- -uGuuGCUGCUGCUGAuuggaaccCGCgUGCCc -3'
miRNA:   3'- uuCuuCGACGACGACUuc------GUGaACGG- -5'
30041 3' -52.2 NC_006273.1 + 73419 0.67 0.983757
Target:  5'- -uGAAGCccUGCUGCgucuuGGCGCcaGCCg -3'
miRNA:   3'- uuCUUCG--ACGACGacu--UCGUGaaCGG- -5'
30041 3' -52.2 NC_006273.1 + 151677 0.67 0.983757
Target:  5'- cGAGAAGaaGCUGUUGGccacaGGCGgUUGUCc -3'
miRNA:   3'- -UUCUUCgaCGACGACU-----UCGUgAACGG- -5'
30041 3' -52.2 NC_006273.1 + 154726 0.67 0.983757
Target:  5'- --cGAGCUGCUGCUG-GGCuuuaUGCUu -3'
miRNA:   3'- uucUUCGACGACGACuUCGuga-ACGG- -5'
30041 3' -52.2 NC_006273.1 + 115576 0.67 0.982579
Target:  5'- -uGguGCUGCUGCUGuugugggugcggacGGUGCgggUGCCg -3'
miRNA:   3'- uuCuuCGACGACGACu-------------UCGUGa--ACGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.