miRNA display CGI


Results 21 - 40 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30041 3' -52.2 NC_006273.1 + 202636 0.69 0.946261
Target:  5'- ----cGCUGCcgcaguUGCUGGAGCGCg-GCCu -3'
miRNA:   3'- uucuuCGACG------ACGACUUCGUGaaCGG- -5'
30041 3' -52.2 NC_006273.1 + 87708 0.69 0.931664
Target:  5'- cGGggGCUGCgacuguUGCUGcuGUugUUGCg -3'
miRNA:   3'- uUCuuCGACG------ACGACuuCGugAACGg -5'
30041 3' -52.2 NC_006273.1 + 95883 0.68 0.965709
Target:  5'- cAGGAGCgcuacgcggaGCUGCaGAAGCGCaagaGCCa -3'
miRNA:   3'- uUCUUCGa---------CGACGaCUUCGUGaa--CGG- -5'
30041 3' -52.2 NC_006273.1 + 103892 0.68 0.965709
Target:  5'- cGAGGAGUUGCUGUUGca-CACcacgGCCg -3'
miRNA:   3'- -UUCUUCGACGACGACuucGUGaa--CGG- -5'
30041 3' -52.2 NC_006273.1 + 144752 0.68 0.965709
Target:  5'- cAGAAcgUGCUGCgGAGGCACgacgcggcgGCCg -3'
miRNA:   3'- uUCUUcgACGACGaCUUCGUGaa-------CGG- -5'
30041 3' -52.2 NC_006273.1 + 121621 0.68 0.954754
Target:  5'- -cGggGUUGCucuUGCUGAgcugcaugAGCACggcGCCg -3'
miRNA:   3'- uuCuuCGACG---ACGACU--------UCGUGaa-CGG- -5'
30041 3' -52.2 NC_006273.1 + 16308 0.68 0.965709
Target:  5'- aGAGAuuCUGCUGCUGu-GCGCgcGUCa -3'
miRNA:   3'- -UUCUucGACGACGACuuCGUGaaCGG- -5'
30041 3' -52.2 NC_006273.1 + 201950 0.68 0.958639
Target:  5'- --cAAGCUGCgccgggGCUGucGCGCgccGCCg -3'
miRNA:   3'- uucUUCGACGa-----CGACuuCGUGaa-CGG- -5'
30041 3' -52.2 NC_006273.1 + 196993 0.68 0.968904
Target:  5'- cGGAGGC-GCcgGCgGGAGCGCgauuugcgUGCCa -3'
miRNA:   3'- uUCUUCGaCGa-CGaCUUCGUGa-------ACGG- -5'
30041 3' -52.2 NC_006273.1 + 2100 0.68 0.968904
Target:  5'- cGGAGGC-GCcgGCgGGAGCGCgauuugcgUGCCa -3'
miRNA:   3'- uUCUUCGaCGa-CGaCUUCGUGa-------ACGG- -5'
30041 3' -52.2 NC_006273.1 + 80059 0.68 0.968904
Target:  5'- uGAGAcGCUGCaugaGCUGGuAGCGCUUGa- -3'
miRNA:   3'- -UUCUuCGACGa---CGACU-UCGUGAACgg -5'
30041 3' -52.2 NC_006273.1 + 5706 0.68 0.971882
Target:  5'- cGGGGAcCUGUUGCUcuGGCGCUUcGCCc -3'
miRNA:   3'- -UUCUUcGACGACGAcuUCGUGAA-CGG- -5'
30041 3' -52.2 NC_006273.1 + 206787 0.68 0.953542
Target:  5'- aGAGGAGCUGCcGCacaccgccucgcuuaGAGCGCUgGCCg -3'
miRNA:   3'- -UUCUUCGACGaCGac-------------UUCGUGAaCGG- -5'
30041 3' -52.2 NC_006273.1 + 64764 0.67 0.979578
Target:  5'- aAAGAAGCUGCccGCcGGcgGGCGgcUGCCg -3'
miRNA:   3'- -UUCUUCGACGa-CGaCU--UCGUgaACGG- -5'
30041 3' -52.2 NC_006273.1 + 147114 0.67 0.981757
Target:  5'- gAAGAGGaagGCUG-UGAGGCugUcGCCc -3'
miRNA:   3'- -UUCUUCga-CGACgACUUCGugAaCGG- -5'
30041 3' -52.2 NC_006273.1 + 115576 0.67 0.982579
Target:  5'- -uGguGCUGCUGCUGuugugggugcggacGGUGCgggUGCCg -3'
miRNA:   3'- uuCuuCGACGACGACu-------------UCGUGa--ACGG- -5'
30041 3' -52.2 NC_006273.1 + 85861 0.67 0.983757
Target:  5'- uGAGua-CUGCUGUUGcuGCugUUGCUg -3'
miRNA:   3'- -UUCuucGACGACGACuuCGugAACGG- -5'
30041 3' -52.2 NC_006273.1 + 151677 0.67 0.983757
Target:  5'- cGAGAAGaaGCUGUUGGccacaGGCGgUUGUCc -3'
miRNA:   3'- -UUCUUCgaCGACGACU-----UCGUgAACGG- -5'
30041 3' -52.2 NC_006273.1 + 112846 0.67 0.977211
Target:  5'- cAGGAGCUGCUGCUc-GGCGug-GUCa -3'
miRNA:   3'- uUCUUCGACGACGAcuUCGUgaaCGG- -5'
30041 3' -52.2 NC_006273.1 + 87359 0.67 0.981757
Target:  5'- cGGGuuCUGCUcCcGAAGCugUUGCCg -3'
miRNA:   3'- uUCUucGACGAcGaCUUCGugAACGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.