miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30041 3' -52.2 NC_006273.1 + 45224 1.09 0.006993
Target:  5'- gAAGAAGCUGCUGCUGAAGCACUUGCCc -3'
miRNA:   3'- -UUCUUCGACGACGACUUCGUGAACGG- -5'
30041 3' -52.2 NC_006273.1 + 190118 0.78 0.503436
Target:  5'- gAAGAGGUUGCUGUUGcGGCGCgagcaGCCg -3'
miRNA:   3'- -UUCUUCGACGACGACuUCGUGaa---CGG- -5'
30041 3' -52.2 NC_006273.1 + 42526 0.78 0.53361
Target:  5'- ----cGuCUGCUGUUGAcAGCACUUGCCa -3'
miRNA:   3'- uucuuC-GACGACGACU-UCGUGAACGG- -5'
30041 3' -52.2 NC_006273.1 + 73107 0.75 0.679585
Target:  5'- ---cAGCUGCUGCUGGAGgACc-GCCg -3'
miRNA:   3'- uucuUCGACGACGACUUCgUGaaCGG- -5'
30041 3' -52.2 NC_006273.1 + 8787 0.73 0.780147
Target:  5'- aAAGAGG-UGCUGCUGAAGUAagacgUGUCa -3'
miRNA:   3'- -UUCUUCgACGACGACUUCGUga---ACGG- -5'
30041 3' -52.2 NC_006273.1 + 4944 0.73 0.798896
Target:  5'- cGAGgcGCUGCU-CUGAAGCcaagUGCCg -3'
miRNA:   3'- -UUCuuCGACGAcGACUUCGuga-ACGG- -5'
30041 3' -52.2 NC_006273.1 + 158991 0.73 0.798896
Target:  5'- -cGucGUUGCUGCUGcuGCuCUUGCCu -3'
miRNA:   3'- uuCuuCGACGACGACuuCGuGAACGG- -5'
30041 3' -52.2 NC_006273.1 + 139233 0.71 0.866827
Target:  5'- uAGGAGGCgcGCUGCUccucGGAGCACggGCg -3'
miRNA:   3'- -UUCUUCGa-CGACGA----CUUCGUGaaCGg -5'
30041 3' -52.2 NC_006273.1 + 87663 0.71 0.888825
Target:  5'- cGGuGGCUGCUGUUGcuGCugUUGUUg -3'
miRNA:   3'- uUCuUCGACGACGACuuCGugAACGG- -5'
30041 3' -52.2 NC_006273.1 + 129972 0.7 0.902305
Target:  5'- -uGggGCUGCUGCU---GCACggGCUc -3'
miRNA:   3'- uuCuuCGACGACGAcuuCGUGaaCGG- -5'
30041 3' -52.2 NC_006273.1 + 111145 0.7 0.908678
Target:  5'- cGGAGGCUGCUGUUGuAGGUACa---- -3'
miRNA:   3'- uUCUUCGACGACGAC-UUCGUGaacgg -5'
30041 3' -52.2 NC_006273.1 + 216420 0.7 0.908678
Target:  5'- cAGgcGCUGCUGUUGuugGGUACcUUGUCa -3'
miRNA:   3'- uUCuuCGACGACGACu--UCGUG-AACGG- -5'
30041 3' -52.2 NC_006273.1 + 99522 0.7 0.914802
Target:  5'- cGGcGGCUGCUGCUGuuGgG-UUGCCg -3'
miRNA:   3'- uUCuUCGACGACGACuuCgUgAACGG- -5'
30041 3' -52.2 NC_006273.1 + 104803 0.7 0.920674
Target:  5'- -uGAAGCUGCUGCcGcucuauAGGCAa-UGCCa -3'
miRNA:   3'- uuCUUCGACGACGaC------UUCGUgaACGG- -5'
30041 3' -52.2 NC_006273.1 + 148414 0.7 0.920674
Target:  5'- -uGGAGaUGCUGCUGAAgGCGCU-GCa -3'
miRNA:   3'- uuCUUCgACGACGACUU-CGUGAaCGg -5'
30041 3' -52.2 NC_006273.1 + 201075 0.7 0.920674
Target:  5'- cGAGGAGCUGUaccUGCgccugGAcGGCACccugUGCCu -3'
miRNA:   3'- -UUCUUCGACG---ACGa----CU-UCGUGa---ACGG- -5'
30041 3' -52.2 NC_006273.1 + 189772 0.7 0.920674
Target:  5'- -uGAuGCUGCUGCUGuuGUugUagaGCCg -3'
miRNA:   3'- uuCUuCGACGACGACuuCGugAa--CGG- -5'
30041 3' -52.2 NC_006273.1 + 87708 0.69 0.931664
Target:  5'- cGGggGCUGCgacuguUGCUGcuGUugUUGCg -3'
miRNA:   3'- uUCuuCGACG------ACGACuuCGugAACGg -5'
30041 3' -52.2 NC_006273.1 + 182847 0.69 0.93678
Target:  5'- --cGAGCUcgGCUGCUGcAGCACaacgGCCc -3'
miRNA:   3'- uucUUCGA--CGACGACuUCGUGaa--CGG- -5'
30041 3' -52.2 NC_006273.1 + 129994 0.69 0.946261
Target:  5'- -cGAccGGCgGCUGCUGuuGCACggGCUc -3'
miRNA:   3'- uuCU--UCGaCGACGACuuCGUGaaCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.