Results 21 - 40 of 65 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30041 | 3' | -52.2 | NC_006273.1 | + | 87359 | 0.67 | 0.981757 |
Target: 5'- cGGGuuCUGCUcCcGAAGCugUUGCCg -3' miRNA: 3'- uUCUucGACGAcGaCUUCGugAACGG- -5' |
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30041 | 3' | -52.2 | NC_006273.1 | + | 147114 | 0.67 | 0.981757 |
Target: 5'- gAAGAGGaagGCUG-UGAGGCugUcGCCc -3' miRNA: 3'- -UUCUUCga-CGACgACUUCGugAaCGG- -5' |
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30041 | 3' | -52.2 | NC_006273.1 | + | 234793 | 0.67 | 0.979578 |
Target: 5'- cAGAAGCg---GC-GGAGCGCUUGCg -3' miRNA: 3'- uUCUUCGacgaCGaCUUCGUGAACGg -5' |
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30041 | 3' | -52.2 | NC_006273.1 | + | 194855 | 0.67 | 0.979578 |
Target: 5'- cAGAAGCg---GC-GGAGCGCUUGCg -3' miRNA: 3'- uUCUUCGacgaCGaCUUCGUGAACGg -5' |
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30041 | 3' | -52.2 | NC_006273.1 | + | 202474 | 0.67 | 0.979578 |
Target: 5'- uGGAAGCUGCUGgUGGugacccagGGuCAgUUGCg -3' miRNA: 3'- uUCUUCGACGACgACU--------UC-GUgAACGg -5' |
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30041 | 3' | -52.2 | NC_006273.1 | + | 66812 | 0.67 | 0.979578 |
Target: 5'- cAGGAGCaGCUaGCUcagcugGAAGCGCUaggcgGCCu -3' miRNA: 3'- uUCUUCGaCGA-CGA------CUUCGUGAa----CGG- -5' |
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30041 | 3' | -52.2 | NC_006273.1 | + | 64764 | 0.67 | 0.979578 |
Target: 5'- aAAGAAGCUGCccGCcGGcgGGCGgcUGCCg -3' miRNA: 3'- -UUCUUCGACGa-CGaCU--UCGUgaACGG- -5' |
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30041 | 3' | -52.2 | NC_006273.1 | + | 56267 | 0.67 | 0.979578 |
Target: 5'- aGGGAcgguGGCUGguCUGCUGggGCGgguacgGCCg -3' miRNA: 3'- -UUCU----UCGAC--GACGACuuCGUgaa---CGG- -5' |
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30041 | 3' | -52.2 | NC_006273.1 | + | 150642 | 0.67 | 0.977211 |
Target: 5'- aAAGAAGCgUGCUaccaGCUGcAGGCAgguaUGCCg -3' miRNA: 3'- -UUCUUCG-ACGA----CGAC-UUCGUga--ACGG- -5' |
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30041 | 3' | -52.2 | NC_006273.1 | + | 112846 | 0.67 | 0.977211 |
Target: 5'- cAGGAGCUGCUGCUc-GGCGug-GUCa -3' miRNA: 3'- uUCUUCGACGACGAcuUCGUgaaCGG- -5' |
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30041 | 3' | -52.2 | NC_006273.1 | + | 145328 | 0.67 | 0.977211 |
Target: 5'- -cGggGCUGUgcgagGCcugugGggGUACUuguUGCCa -3' miRNA: 3'- uuCuuCGACGa----CGa----CuuCGUGA---ACGG- -5' |
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30041 | 3' | -52.2 | NC_006273.1 | + | 192793 | 0.67 | 0.977211 |
Target: 5'- cAGGAGCguugcaaGCUGCUGGucaaggagcuGCGCaugUGCCu -3' miRNA: 3'- uUCUUCGa------CGACGACUu---------CGUGa--ACGG- -5' |
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30041 | 3' | -52.2 | NC_006273.1 | + | 5706 | 0.68 | 0.971882 |
Target: 5'- cGGGGAcCUGUUGCUcuGGCGCUUcGCCc -3' miRNA: 3'- -UUCUUcGACGACGAcuUCGUGAA-CGG- -5' |
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30041 | 3' | -52.2 | NC_006273.1 | + | 80059 | 0.68 | 0.968904 |
Target: 5'- uGAGAcGCUGCaugaGCUGGuAGCGCUUGa- -3' miRNA: 3'- -UUCUuCGACGa---CGACU-UCGUGAACgg -5' |
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30041 | 3' | -52.2 | NC_006273.1 | + | 2100 | 0.68 | 0.968904 |
Target: 5'- cGGAGGC-GCcgGCgGGAGCGCgauuugcgUGCCa -3' miRNA: 3'- uUCUUCGaCGa-CGaCUUCGUGa-------ACGG- -5' |
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30041 | 3' | -52.2 | NC_006273.1 | + | 196993 | 0.68 | 0.968904 |
Target: 5'- cGGAGGC-GCcgGCgGGAGCGCgauuugcgUGCCa -3' miRNA: 3'- uUCUUCGaCGa-CGaCUUCGUGa-------ACGG- -5' |
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30041 | 3' | -52.2 | NC_006273.1 | + | 103892 | 0.68 | 0.965709 |
Target: 5'- cGAGGAGUUGCUGUUGca-CACcacgGCCg -3' miRNA: 3'- -UUCUUCGACGACGACuucGUGaa--CGG- -5' |
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30041 | 3' | -52.2 | NC_006273.1 | + | 16308 | 0.68 | 0.965709 |
Target: 5'- aGAGAuuCUGCUGCUGu-GCGCgcGUCa -3' miRNA: 3'- -UUCUucGACGACGACuuCGUGaaCGG- -5' |
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30041 | 3' | -52.2 | NC_006273.1 | + | 144752 | 0.68 | 0.965709 |
Target: 5'- cAGAAcgUGCUGCgGAGGCACgacgcggcgGCCg -3' miRNA: 3'- uUCUUcgACGACGaCUUCGUGaa-------CGG- -5' |
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30041 | 3' | -52.2 | NC_006273.1 | + | 95883 | 0.68 | 0.965709 |
Target: 5'- cAGGAGCgcuacgcggaGCUGCaGAAGCGCaagaGCCa -3' miRNA: 3'- uUCUUCGa---------CGACGaCUUCGUGaa--CGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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