Results 61 - 65 of 65 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
30041 | 3' | -52.2 | NC_006273.1 | + | 8787 | 0.73 | 0.780147 |
Target: 5'- aAAGAGG-UGCUGCUGAAGUAagacgUGUCa -3' miRNA: 3'- -UUCUUCgACGACGACUUCGUga---ACGG- -5' |
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30041 | 3' | -52.2 | NC_006273.1 | + | 73107 | 0.75 | 0.679585 |
Target: 5'- ---cAGCUGCUGCUGGAGgACc-GCCg -3' miRNA: 3'- uucuUCGACGACGACUUCgUGaaCGG- -5' |
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30041 | 3' | -52.2 | NC_006273.1 | + | 42526 | 0.78 | 0.53361 |
Target: 5'- ----cGuCUGCUGUUGAcAGCACUUGCCa -3' miRNA: 3'- uucuuC-GACGACGACU-UCGUGAACGG- -5' |
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30041 | 3' | -52.2 | NC_006273.1 | + | 190118 | 0.78 | 0.503436 |
Target: 5'- gAAGAGGUUGCUGUUGcGGCGCgagcaGCCg -3' miRNA: 3'- -UUCUUCGACGACGACuUCGUGaa---CGG- -5' |
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30041 | 3' | -52.2 | NC_006273.1 | + | 45224 | 1.09 | 0.006993 |
Target: 5'- gAAGAAGCUGCUGCUGAAGCACUUGCCc -3' miRNA: 3'- -UUCUUCGACGACGACUUCGUGAACGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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