miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30041 3' -52.2 NC_006273.1 + 1913 0.66 0.988769
Target:  5'- ----uGCUGCgGCUGGcuGGCGCUgggcgcggugcUGCCc -3'
miRNA:   3'- uucuuCGACGaCGACU--UCGUGA-----------ACGG- -5'
30041 3' -52.2 NC_006273.1 + 2100 0.68 0.968904
Target:  5'- cGGAGGC-GCcgGCgGGAGCGCgauuugcgUGCCa -3'
miRNA:   3'- uUCUUCGaCGa-CGaCUUCGUGa-------ACGG- -5'
30041 3' -52.2 NC_006273.1 + 4944 0.73 0.798896
Target:  5'- cGAGgcGCUGCU-CUGAAGCcaagUGCCg -3'
miRNA:   3'- -UUCuuCGACGAcGACUUCGuga-ACGG- -5'
30041 3' -52.2 NC_006273.1 + 5706 0.68 0.971882
Target:  5'- cGGGGAcCUGUUGCUcuGGCGCUUcGCCc -3'
miRNA:   3'- -UUCUUcGACGACGAcuUCGUGAA-CGG- -5'
30041 3' -52.2 NC_006273.1 + 8787 0.73 0.780147
Target:  5'- aAAGAGG-UGCUGCUGAAGUAagacgUGUCa -3'
miRNA:   3'- -UUCUUCgACGACGACUUCGUga---ACGG- -5'
30041 3' -52.2 NC_006273.1 + 16308 0.68 0.965709
Target:  5'- aGAGAuuCUGCUGCUGu-GCGCgcGUCa -3'
miRNA:   3'- -UUCUucGACGACGACuuCGUGaaCGG- -5'
30041 3' -52.2 NC_006273.1 + 32030 0.66 0.987254
Target:  5'- -cGAugguGCUGCUGUUGGGauacGUGCUgGCCa -3'
miRNA:   3'- uuCUu---CGACGACGACUU----CGUGAaCGG- -5'
30041 3' -52.2 NC_006273.1 + 42526 0.78 0.53361
Target:  5'- ----cGuCUGCUGUUGAcAGCACUUGCCa -3'
miRNA:   3'- uucuuC-GACGACGACU-UCGUGAACGG- -5'
30041 3' -52.2 NC_006273.1 + 45224 1.09 0.006993
Target:  5'- gAAGAAGCUGCUGCUGAAGCACUUGCCc -3'
miRNA:   3'- -UUCUUCGACGACGACUUCGUGAACGG- -5'
30041 3' -52.2 NC_006273.1 + 55386 0.66 0.990009
Target:  5'- cAGgcGCUGCUGC-GAcuccaccGGCACg-GCCc -3'
miRNA:   3'- uUCuuCGACGACGaCU-------UCGUGaaCGG- -5'
30041 3' -52.2 NC_006273.1 + 56267 0.67 0.979578
Target:  5'- aGGGAcgguGGCUGguCUGCUGggGCGgguacgGCCg -3'
miRNA:   3'- -UUCU----UCGAC--GACGACuuCGUgaa---CGG- -5'
30041 3' -52.2 NC_006273.1 + 61654 0.66 0.99014
Target:  5'- --aGAGCaGCUGCg--GGCACggGCCa -3'
miRNA:   3'- uucUUCGaCGACGacuUCGUGaaCGG- -5'
30041 3' -52.2 NC_006273.1 + 64764 0.67 0.979578
Target:  5'- aAAGAAGCUGCccGCcGGcgGGCGgcUGCCg -3'
miRNA:   3'- -UUCUUCGACGa-CGaCU--UCGUgaACGG- -5'
30041 3' -52.2 NC_006273.1 + 66812 0.67 0.979578
Target:  5'- cAGGAGCaGCUaGCUcagcugGAAGCGCUaggcgGCCu -3'
miRNA:   3'- uUCUUCGaCGA-CGA------CUUCGUGAa----CGG- -5'
30041 3' -52.2 NC_006273.1 + 73107 0.75 0.679585
Target:  5'- ---cAGCUGCUGCUGGAGgACc-GCCg -3'
miRNA:   3'- uucuUCGACGACGACUUCgUGaaCGG- -5'
30041 3' -52.2 NC_006273.1 + 73419 0.67 0.983757
Target:  5'- -uGAAGCccUGCUGCgucuuGGCGCcaGCCg -3'
miRNA:   3'- uuCUUCG--ACGACGacu--UCGUGaaCGG- -5'
30041 3' -52.2 NC_006273.1 + 80059 0.68 0.968904
Target:  5'- uGAGAcGCUGCaugaGCUGGuAGCGCUUGa- -3'
miRNA:   3'- -UUCUuCGACGa---CGACU-UCGUGAACgg -5'
30041 3' -52.2 NC_006273.1 + 85861 0.67 0.983757
Target:  5'- uGAGua-CUGCUGUUGcuGCugUUGCUg -3'
miRNA:   3'- -UUCuucGACGACGACuuCGugAACGG- -5'
30041 3' -52.2 NC_006273.1 + 87359 0.67 0.981757
Target:  5'- cGGGuuCUGCUcCcGAAGCugUUGCCg -3'
miRNA:   3'- uUCUucGACGAcGaCUUCGugAACGG- -5'
30041 3' -52.2 NC_006273.1 + 87663 0.71 0.888825
Target:  5'- cGGuGGCUGCUGUUGcuGCugUUGUUg -3'
miRNA:   3'- uUCuUCGACGACGACuuCGugAACGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.