Results 21 - 40 of 65 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30041 | 3' | -52.2 | NC_006273.1 | + | 87708 | 0.69 | 0.931664 |
Target: 5'- cGGggGCUGCgacuguUGCUGcuGUugUUGCg -3' miRNA: 3'- uUCuuCGACG------ACGACuuCGugAACGg -5' |
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30041 | 3' | -52.2 | NC_006273.1 | + | 95883 | 0.68 | 0.965709 |
Target: 5'- cAGGAGCgcuacgcggaGCUGCaGAAGCGCaagaGCCa -3' miRNA: 3'- uUCUUCGa---------CGACGaCUUCGUGaa--CGG- -5' |
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30041 | 3' | -52.2 | NC_006273.1 | + | 99522 | 0.7 | 0.914802 |
Target: 5'- cGGcGGCUGCUGCUGuuGgG-UUGCCg -3' miRNA: 3'- uUCuUCGACGACGACuuCgUgAACGG- -5' |
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30041 | 3' | -52.2 | NC_006273.1 | + | 103892 | 0.68 | 0.965709 |
Target: 5'- cGAGGAGUUGCUGUUGca-CACcacgGCCg -3' miRNA: 3'- -UUCUUCGACGACGACuucGUGaa--CGG- -5' |
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30041 | 3' | -52.2 | NC_006273.1 | + | 104803 | 0.7 | 0.920674 |
Target: 5'- -uGAAGCUGCUGCcGcucuauAGGCAa-UGCCa -3' miRNA: 3'- uuCUUCGACGACGaC------UUCGUgaACGG- -5' |
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30041 | 3' | -52.2 | NC_006273.1 | + | 110909 | 0.66 | 0.99014 |
Target: 5'- cAGGAGCUGCUgaugcgGCUGGAcCGCgaGCg -3' miRNA: 3'- uUCUUCGACGA------CGACUUcGUGaaCGg -5' |
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30041 | 3' | -52.2 | NC_006273.1 | + | 111145 | 0.7 | 0.908678 |
Target: 5'- cGGAGGCUGCUGUUGuAGGUACa---- -3' miRNA: 3'- uUCUUCGACGACGAC-UUCGUGaacgg -5' |
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30041 | 3' | -52.2 | NC_006273.1 | + | 112846 | 0.67 | 0.977211 |
Target: 5'- cAGGAGCUGCUGCUc-GGCGug-GUCa -3' miRNA: 3'- uUCUUCGACGACGAcuUCGUgaaCGG- -5' |
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30041 | 3' | -52.2 | NC_006273.1 | + | 113256 | 0.69 | 0.950629 |
Target: 5'- gGAGGAGCUGgUGCaaGAGCGuCUgucggGCCa -3' miRNA: 3'- -UUCUUCGACgACGacUUCGU-GAa----CGG- -5' |
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30041 | 3' | -52.2 | NC_006273.1 | + | 115576 | 0.67 | 0.982579 |
Target: 5'- -uGguGCUGCUGCUGuugugggugcggacGGUGCgggUGCCg -3' miRNA: 3'- uuCuuCGACGACGACu-------------UCGUGa--ACGG- -5' |
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30041 | 3' | -52.2 | NC_006273.1 | + | 117339 | 0.67 | 0.983757 |
Target: 5'- -uGuuGCUGCUGCUGAuuggaaccCGCgUGCCc -3' miRNA: 3'- uuCuuCGACGACGACUuc------GUGaACGG- -5' |
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30041 | 3' | -52.2 | NC_006273.1 | + | 119455 | 0.66 | 0.987254 |
Target: 5'- uGAGcGGCgGaCUGCUGAcGCGCUUugugcagcGCCa -3' miRNA: 3'- -UUCuUCGaC-GACGACUuCGUGAA--------CGG- -5' |
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30041 | 3' | -52.2 | NC_006273.1 | + | 121621 | 0.68 | 0.954754 |
Target: 5'- -cGggGUUGCucuUGCUGAgcugcaugAGCACggcGCCg -3' miRNA: 3'- uuCuuCGACG---ACGACU--------UCGUGaa-CGG- -5' |
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30041 | 3' | -52.2 | NC_006273.1 | + | 129972 | 0.7 | 0.902305 |
Target: 5'- -uGggGCUGCUGCU---GCACggGCUc -3' miRNA: 3'- uuCuuCGACGACGAcuuCGUGaaCGG- -5' |
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30041 | 3' | -52.2 | NC_006273.1 | + | 129994 | 0.69 | 0.946261 |
Target: 5'- -cGAccGGCgGCUGCUGuuGCACggGCUc -3' miRNA: 3'- uuCU--UCGaCGACGACuuCGUGaaCGG- -5' |
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30041 | 3' | -52.2 | NC_006273.1 | + | 132097 | 0.66 | 0.99014 |
Target: 5'- ---uGGCaccGCUGCUGGAGCGaccgcUGCCc -3' miRNA: 3'- uucuUCGa--CGACGACUUCGUga---ACGG- -5' |
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30041 | 3' | -52.2 | NC_006273.1 | + | 139233 | 0.71 | 0.866827 |
Target: 5'- uAGGAGGCgcGCUGCUccucGGAGCACggGCg -3' miRNA: 3'- -UUCUUCGa-CGACGA----CUUCGUGaaCGg -5' |
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30041 | 3' | -52.2 | NC_006273.1 | + | 144752 | 0.68 | 0.965709 |
Target: 5'- cAGAAcgUGCUGCgGAGGCACgacgcggcgGCCg -3' miRNA: 3'- uUCUUcgACGACGaCUUCGUGaa-------CGG- -5' |
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30041 | 3' | -52.2 | NC_006273.1 | + | 145328 | 0.67 | 0.977211 |
Target: 5'- -cGggGCUGUgcgagGCcugugGggGUACUuguUGCCa -3' miRNA: 3'- uuCuuCGACGa----CGa----CuuCGUGA---ACGG- -5' |
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30041 | 3' | -52.2 | NC_006273.1 | + | 147114 | 0.67 | 0.981757 |
Target: 5'- gAAGAGGaagGCUG-UGAGGCugUcGCCc -3' miRNA: 3'- -UUCUUCga-CGACgACUUCGugAaCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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