miRNA display CGI


Results 41 - 60 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30041 3' -52.2 NC_006273.1 + 147240 0.66 0.988769
Target:  5'- uGGAug--GCUGC-GAGGCGCUgGCCg -3'
miRNA:   3'- uUCUucgaCGACGaCUUCGUGAaCGG- -5'
30041 3' -52.2 NC_006273.1 + 148414 0.7 0.920674
Target:  5'- -uGGAGaUGCUGCUGAAgGCGCU-GCa -3'
miRNA:   3'- uuCUUCgACGACGACUU-CGUGAaCGg -5'
30041 3' -52.2 NC_006273.1 + 148650 0.66 0.991019
Target:  5'- uGGAcGCgGCgGCUGAGGUGCUcucguggugcggccUGCCc -3'
miRNA:   3'- uUCUuCGaCGaCGACUUCGUGA--------------ACGG- -5'
30041 3' -52.2 NC_006273.1 + 150642 0.67 0.977211
Target:  5'- aAAGAAGCgUGCUaccaGCUGcAGGCAgguaUGCCg -3'
miRNA:   3'- -UUCUUCG-ACGA----CGAC-UUCGUga--ACGG- -5'
30041 3' -52.2 NC_006273.1 + 151677 0.67 0.983757
Target:  5'- cGAGAAGaaGCUGUUGGccacaGGCGgUUGUCc -3'
miRNA:   3'- -UUCUUCgaCGACGACU-----UCGUgAACGG- -5'
30041 3' -52.2 NC_006273.1 + 154726 0.67 0.983757
Target:  5'- --cGAGCUGCUGCUG-GGCuuuaUGCUu -3'
miRNA:   3'- uucUUCGACGACGACuUCGuga-ACGG- -5'
30041 3' -52.2 NC_006273.1 + 154943 0.66 0.991376
Target:  5'- gGAGAuGUUGCgugaGCUGgcGCGCguugagcUGCCc -3'
miRNA:   3'- -UUCUuCGACGa---CGACuuCGUGa------ACGG- -5'
30041 3' -52.2 NC_006273.1 + 158991 0.73 0.798896
Target:  5'- -cGucGUUGCUGCUGcuGCuCUUGCCu -3'
miRNA:   3'- uuCuuCGACGACGACuuCGuGAACGG- -5'
30041 3' -52.2 NC_006273.1 + 161407 0.66 0.985587
Target:  5'- cGAGAAuCUGCUGCgcGAGCugUacGCCa -3'
miRNA:   3'- -UUCUUcGACGACGacUUCGugAa-CGG- -5'
30041 3' -52.2 NC_006273.1 + 164267 0.66 0.99014
Target:  5'- -cGAGGCgaaacUGgUGCUGGcGGCGCcgggUGCCa -3'
miRNA:   3'- uuCUUCG-----ACgACGACU-UCGUGa---ACGG- -5'
30041 3' -52.2 NC_006273.1 + 182847 0.69 0.93678
Target:  5'- --cGAGCUcgGCUGCUGcAGCACaacgGCCc -3'
miRNA:   3'- uucUUCGA--CGACGACuUCGUGaa--CGG- -5'
30041 3' -52.2 NC_006273.1 + 187308 0.66 0.991376
Target:  5'- -cGggGCgGCUGCUccagguccgcGGAGCuaaUGCCg -3'
miRNA:   3'- uuCuuCGaCGACGA----------CUUCGugaACGG- -5'
30041 3' -52.2 NC_006273.1 + 189772 0.7 0.920674
Target:  5'- -uGAuGCUGCUGCUGuuGUugUagaGCCg -3'
miRNA:   3'- uuCUuCGACGACGACuuCGugAa--CGG- -5'
30041 3' -52.2 NC_006273.1 + 190118 0.78 0.503436
Target:  5'- gAAGAGGUUGCUGUUGcGGCGCgagcaGCCg -3'
miRNA:   3'- -UUCUUCGACGACGACuUCGUGaa---CGG- -5'
30041 3' -52.2 NC_006273.1 + 192793 0.67 0.977211
Target:  5'- cAGGAGCguugcaaGCUGCUGGucaaggagcuGCGCaugUGCCu -3'
miRNA:   3'- uUCUUCGa------CGACGACUu---------CGUGa--ACGG- -5'
30041 3' -52.2 NC_006273.1 + 194855 0.67 0.979578
Target:  5'- cAGAAGCg---GC-GGAGCGCUUGCg -3'
miRNA:   3'- uUCUUCGacgaCGaCUUCGUGAACGg -5'
30041 3' -52.2 NC_006273.1 + 196805 0.66 0.988769
Target:  5'- ----uGCUGCgGCUGGcuGGCGCUgggcgcggugcUGCCc -3'
miRNA:   3'- uucuuCGACGaCGACU--UCGUGA-----------ACGG- -5'
30041 3' -52.2 NC_006273.1 + 196993 0.68 0.968904
Target:  5'- cGGAGGC-GCcgGCgGGAGCGCgauuugcgUGCCa -3'
miRNA:   3'- uUCUUCGaCGa-CGaCUUCGUGa-------ACGG- -5'
30041 3' -52.2 NC_006273.1 + 201075 0.7 0.920674
Target:  5'- cGAGGAGCUGUaccUGCgccugGAcGGCACccugUGCCu -3'
miRNA:   3'- -UUCUUCGACG---ACGa----CU-UCGUGa---ACGG- -5'
30041 3' -52.2 NC_006273.1 + 201950 0.68 0.958639
Target:  5'- --cAAGCUGCgccgggGCUGucGCGCgccGCCg -3'
miRNA:   3'- uucUUCGACGa-----CGACuuCGUGaa-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.