Results 61 - 65 of 65 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30041 | 3' | -52.2 | NC_006273.1 | + | 202474 | 0.67 | 0.979578 |
Target: 5'- uGGAAGCUGCUGgUGGugacccagGGuCAgUUGCg -3' miRNA: 3'- uUCUUCGACGACgACU--------UC-GUgAACGg -5' |
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30041 | 3' | -52.2 | NC_006273.1 | + | 202636 | 0.69 | 0.946261 |
Target: 5'- ----cGCUGCcgcaguUGCUGGAGCGCg-GCCu -3' miRNA: 3'- uucuuCGACG------ACGACUUCGUGaaCGG- -5' |
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30041 | 3' | -52.2 | NC_006273.1 | + | 206787 | 0.68 | 0.953542 |
Target: 5'- aGAGGAGCUGCcGCacaccgccucgcuuaGAGCGCUgGCCg -3' miRNA: 3'- -UUCUUCGACGaCGac-------------UUCGUGAaCGG- -5' |
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30041 | 3' | -52.2 | NC_006273.1 | + | 216420 | 0.7 | 0.908678 |
Target: 5'- cAGgcGCUGCUGUUGuugGGUACcUUGUCa -3' miRNA: 3'- uUCuuCGACGACGACu--UCGUG-AACGG- -5' |
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30041 | 3' | -52.2 | NC_006273.1 | + | 234793 | 0.67 | 0.979578 |
Target: 5'- cAGAAGCg---GC-GGAGCGCUUGCg -3' miRNA: 3'- uUCUUCGacgaCGaCUUCGUGAACGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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