Results 1 - 20 of 65 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30041 | 3' | -52.2 | NC_006273.1 | + | 87359 | 0.67 | 0.981757 |
Target: 5'- cGGGuuCUGCUcCcGAAGCugUUGCCg -3' miRNA: 3'- uUCUucGACGAcGaCUUCGugAACGG- -5' |
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30041 | 3' | -52.2 | NC_006273.1 | + | 144752 | 0.68 | 0.965709 |
Target: 5'- cAGAAcgUGCUGCgGAGGCACgacgcggcgGCCg -3' miRNA: 3'- uUCUUcgACGACGaCUUCGUGaa-------CGG- -5' |
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30041 | 3' | -52.2 | NC_006273.1 | + | 196993 | 0.68 | 0.968904 |
Target: 5'- cGGAGGC-GCcgGCgGGAGCGCgauuugcgUGCCa -3' miRNA: 3'- uUCUUCGaCGa-CGaCUUCGUGa-------ACGG- -5' |
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30041 | 3' | -52.2 | NC_006273.1 | + | 112846 | 0.67 | 0.977211 |
Target: 5'- cAGGAGCUGCUGCUc-GGCGug-GUCa -3' miRNA: 3'- uUCUUCGACGACGAcuUCGUgaaCGG- -5' |
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30041 | 3' | -52.2 | NC_006273.1 | + | 150642 | 0.67 | 0.977211 |
Target: 5'- aAAGAAGCgUGCUaccaGCUGcAGGCAgguaUGCCg -3' miRNA: 3'- -UUCUUCG-ACGA----CGAC-UUCGUga--ACGG- -5' |
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30041 | 3' | -52.2 | NC_006273.1 | + | 66812 | 0.67 | 0.979578 |
Target: 5'- cAGGAGCaGCUaGCUcagcugGAAGCGCUaggcgGCCu -3' miRNA: 3'- uUCUUCGaCGA-CGA------CUUCGUGAa----CGG- -5' |
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30041 | 3' | -52.2 | NC_006273.1 | + | 194855 | 0.67 | 0.979578 |
Target: 5'- cAGAAGCg---GC-GGAGCGCUUGCg -3' miRNA: 3'- uUCUUCGacgaCGaCUUCGUGAACGg -5' |
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30041 | 3' | -52.2 | NC_006273.1 | + | 56267 | 0.67 | 0.979578 |
Target: 5'- aGGGAcgguGGCUGguCUGCUGggGCGgguacgGCCg -3' miRNA: 3'- -UUCU----UCGAC--GACGACuuCGUgaa---CGG- -5' |
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30041 | 3' | -52.2 | NC_006273.1 | + | 64764 | 0.67 | 0.979578 |
Target: 5'- aAAGAAGCUGCccGCcGGcgGGCGgcUGCCg -3' miRNA: 3'- -UUCUUCGACGa-CGaCU--UCGUgaACGG- -5' |
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30041 | 3' | -52.2 | NC_006273.1 | + | 113256 | 0.69 | 0.950629 |
Target: 5'- gGAGGAGCUGgUGCaaGAGCGuCUgucggGCCa -3' miRNA: 3'- -UUCUUCGACgACGacUUCGU-GAa----CGG- -5' |
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30041 | 3' | -52.2 | NC_006273.1 | + | 87708 | 0.69 | 0.931664 |
Target: 5'- cGGggGCUGCgacuguUGCUGcuGUugUUGCg -3' miRNA: 3'- uUCuuCGACG------ACGACuuCGugAACGg -5' |
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30041 | 3' | -52.2 | NC_006273.1 | + | 189772 | 0.7 | 0.920674 |
Target: 5'- -uGAuGCUGCUGCUGuuGUugUagaGCCg -3' miRNA: 3'- uuCUuCGACGACGACuuCGugAa--CGG- -5' |
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30041 | 3' | -52.2 | NC_006273.1 | + | 73107 | 0.75 | 0.679585 |
Target: 5'- ---cAGCUGCUGCUGGAGgACc-GCCg -3' miRNA: 3'- uucuUCGACGACGACUUCgUGaaCGG- -5' |
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30041 | 3' | -52.2 | NC_006273.1 | + | 158991 | 0.73 | 0.798896 |
Target: 5'- -cGucGUUGCUGCUGcuGCuCUUGCCu -3' miRNA: 3'- uuCuuCGACGACGACuuCGuGAACGG- -5' |
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30041 | 3' | -52.2 | NC_006273.1 | + | 139233 | 0.71 | 0.866827 |
Target: 5'- uAGGAGGCgcGCUGCUccucGGAGCACggGCg -3' miRNA: 3'- -UUCUUCGa-CGACGA----CUUCGUGaaCGg -5' |
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30041 | 3' | -52.2 | NC_006273.1 | + | 87663 | 0.71 | 0.888825 |
Target: 5'- cGGuGGCUGCUGUUGcuGCugUUGUUg -3' miRNA: 3'- uUCuUCGACGACGACuuCGugAACGG- -5' |
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30041 | 3' | -52.2 | NC_006273.1 | + | 216420 | 0.7 | 0.908678 |
Target: 5'- cAGgcGCUGCUGUUGuugGGUACcUUGUCa -3' miRNA: 3'- uUCuuCGACGACGACu--UCGUG-AACGG- -5' |
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30041 | 3' | -52.2 | NC_006273.1 | + | 111145 | 0.7 | 0.908678 |
Target: 5'- cGGAGGCUGCUGUUGuAGGUACa---- -3' miRNA: 3'- uUCUUCGACGACGAC-UUCGUGaacgg -5' |
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30041 | 3' | -52.2 | NC_006273.1 | + | 99522 | 0.7 | 0.914802 |
Target: 5'- cGGcGGCUGCUGCUGuuGgG-UUGCCg -3' miRNA: 3'- uUCuUCGACGACGACuuCgUgAACGG- -5' |
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30041 | 3' | -52.2 | NC_006273.1 | + | 104803 | 0.7 | 0.920674 |
Target: 5'- -uGAAGCUGCUGCcGcucuauAGGCAa-UGCCa -3' miRNA: 3'- uuCUUCGACGACGaC------UUCGUgaACGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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