miRNA display CGI


Results 41 - 60 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30041 3' -52.2 NC_006273.1 + 32030 0.66 0.987254
Target:  5'- -cGAugguGCUGCUGUUGGGauacGUGCUgGCCa -3'
miRNA:   3'- uuCUu---CGACGACGACUU----CGUGAaCGG- -5'
30041 3' -52.2 NC_006273.1 + 119455 0.66 0.987254
Target:  5'- uGAGcGGCgGaCUGCUGAcGCGCUUugugcagcGCCa -3'
miRNA:   3'- -UUCuUCGaC-GACGACUuCGUGAA--------CGG- -5'
30041 3' -52.2 NC_006273.1 + 1913 0.66 0.988769
Target:  5'- ----uGCUGCgGCUGGcuGGCGCUgggcgcggugcUGCCc -3'
miRNA:   3'- uucuuCGACGaCGACU--UCGUGA-----------ACGG- -5'
30041 3' -52.2 NC_006273.1 + 147240 0.66 0.988769
Target:  5'- uGGAug--GCUGC-GAGGCGCUgGCCg -3'
miRNA:   3'- uUCUucgaCGACGaCUUCGUGAaCGG- -5'
30041 3' -52.2 NC_006273.1 + 2100 0.68 0.968904
Target:  5'- cGGAGGC-GCcgGCgGGAGCGCgauuugcgUGCCa -3'
miRNA:   3'- uUCUUCGaCGa-CGaCUUCGUGa-------ACGG- -5'
30041 3' -52.2 NC_006273.1 + 103892 0.68 0.965709
Target:  5'- cGAGGAGUUGCUGUUGca-CACcacgGCCg -3'
miRNA:   3'- -UUCUUCGACGACGACuucGUGaa--CGG- -5'
30041 3' -52.2 NC_006273.1 + 95883 0.68 0.965709
Target:  5'- cAGGAGCgcuacgcggaGCUGCaGAAGCGCaagaGCCa -3'
miRNA:   3'- uUCUUCGa---------CGACGaCUUCGUGaa--CGG- -5'
30041 3' -52.2 NC_006273.1 + 42526 0.78 0.53361
Target:  5'- ----cGuCUGCUGUUGAcAGCACUUGCCa -3'
miRNA:   3'- uucuuC-GACGACGACU-UCGUGAACGG- -5'
30041 3' -52.2 NC_006273.1 + 8787 0.73 0.780147
Target:  5'- aAAGAGG-UGCUGCUGAAGUAagacgUGUCa -3'
miRNA:   3'- -UUCUUCgACGACGACUUCGUga---ACGG- -5'
30041 3' -52.2 NC_006273.1 + 4944 0.73 0.798896
Target:  5'- cGAGgcGCUGCU-CUGAAGCcaagUGCCg -3'
miRNA:   3'- -UUCuuCGACGAcGACUUCGuga-ACGG- -5'
30041 3' -52.2 NC_006273.1 + 129972 0.7 0.902305
Target:  5'- -uGggGCUGCUGCU---GCACggGCUc -3'
miRNA:   3'- uuCuuCGACGACGAcuuCGUGaaCGG- -5'
30041 3' -52.2 NC_006273.1 + 148414 0.7 0.920674
Target:  5'- -uGGAGaUGCUGCUGAAgGCGCU-GCa -3'
miRNA:   3'- uuCUUCgACGACGACUU-CGUGAaCGg -5'
30041 3' -52.2 NC_006273.1 + 201075 0.7 0.920674
Target:  5'- cGAGGAGCUGUaccUGCgccugGAcGGCACccugUGCCu -3'
miRNA:   3'- -UUCUUCGACG---ACGa----CU-UCGUGa---ACGG- -5'
30041 3' -52.2 NC_006273.1 + 182847 0.69 0.93678
Target:  5'- --cGAGCUcgGCUGCUGcAGCACaacgGCCc -3'
miRNA:   3'- uucUUCGA--CGACGACuUCGUGaa--CGG- -5'
30041 3' -52.2 NC_006273.1 + 129994 0.69 0.946261
Target:  5'- -cGAccGGCgGCUGCUGuuGCACggGCUc -3'
miRNA:   3'- uuCU--UCGaCGACGACuuCGUGaaCGG- -5'
30041 3' -52.2 NC_006273.1 + 202636 0.69 0.946261
Target:  5'- ----cGCUGCcgcaguUGCUGGAGCGCg-GCCu -3'
miRNA:   3'- uucuuCGACG------ACGACUUCGUGaaCGG- -5'
30041 3' -52.2 NC_006273.1 + 206787 0.68 0.953542
Target:  5'- aGAGGAGCUGCcGCacaccgccucgcuuaGAGCGCUgGCCg -3'
miRNA:   3'- -UUCUUCGACGaCGac-------------UUCGUGAaCGG- -5'
30041 3' -52.2 NC_006273.1 + 121621 0.68 0.954754
Target:  5'- -cGggGUUGCucuUGCUGAgcugcaugAGCACggcGCCg -3'
miRNA:   3'- uuCuuCGACG---ACGACU--------UCGUGaa-CGG- -5'
30041 3' -52.2 NC_006273.1 + 201950 0.68 0.958639
Target:  5'- --cAAGCUGCgccgggGCUGucGCGCgccGCCg -3'
miRNA:   3'- uucUUCGACGa-----CGACuuCGUGaa-CGG- -5'
30041 3' -52.2 NC_006273.1 + 16308 0.68 0.965709
Target:  5'- aGAGAuuCUGCUGCUGu-GCGCgcGUCa -3'
miRNA:   3'- -UUCUucGACGACGACuuCGUGaaCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.