Results 1 - 20 of 65 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30041 | 3' | -52.2 | NC_006273.1 | + | 190118 | 0.78 | 0.503436 |
Target: 5'- gAAGAGGUUGCUGUUGcGGCGCgagcaGCCg -3' miRNA: 3'- -UUCUUCGACGACGACuUCGUGaa---CGG- -5' |
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30041 | 3' | -52.2 | NC_006273.1 | + | 80059 | 0.68 | 0.968904 |
Target: 5'- uGAGAcGCUGCaugaGCUGGuAGCGCUUGa- -3' miRNA: 3'- -UUCUuCGACGa---CGACU-UCGUGAACgg -5' |
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30041 | 3' | -52.2 | NC_006273.1 | + | 145328 | 0.67 | 0.977211 |
Target: 5'- -cGggGCUGUgcgagGCcugugGggGUACUuguUGCCa -3' miRNA: 3'- uuCuuCGACGa----CGa----CuuCGUGA---ACGG- -5' |
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30041 | 3' | -52.2 | NC_006273.1 | + | 187308 | 0.66 | 0.991376 |
Target: 5'- -cGggGCgGCUGCUccagguccgcGGAGCuaaUGCCg -3' miRNA: 3'- uuCuuCGaCGACGA----------CUUCGugaACGG- -5' |
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30041 | 3' | -52.2 | NC_006273.1 | + | 129972 | 0.7 | 0.902305 |
Target: 5'- -uGggGCUGCUGCU---GCACggGCUc -3' miRNA: 3'- uuCuuCGACGACGAcuuCGUGaaCGG- -5' |
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30041 | 3' | -52.2 | NC_006273.1 | + | 148414 | 0.7 | 0.920674 |
Target: 5'- -uGGAGaUGCUGCUGAAgGCGCU-GCa -3' miRNA: 3'- uuCUUCgACGACGACUU-CGUGAaCGg -5' |
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30041 | 3' | -52.2 | NC_006273.1 | + | 182847 | 0.69 | 0.93678 |
Target: 5'- --cGAGCUcgGCUGCUGcAGCACaacgGCCc -3' miRNA: 3'- uucUUCGA--CGACGACuUCGUGaa--CGG- -5' |
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30041 | 3' | -52.2 | NC_006273.1 | + | 129994 | 0.69 | 0.946261 |
Target: 5'- -cGAccGGCgGCUGCUGuuGCACggGCUc -3' miRNA: 3'- uuCU--UCGaCGACGACuuCGUGaaCGG- -5' |
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30041 | 3' | -52.2 | NC_006273.1 | + | 121621 | 0.68 | 0.954754 |
Target: 5'- -cGggGUUGCucuUGCUGAgcugcaugAGCACggcGCCg -3' miRNA: 3'- uuCuuCGACG---ACGACU--------UCGUGaa-CGG- -5' |
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30041 | 3' | -52.2 | NC_006273.1 | + | 2100 | 0.68 | 0.968904 |
Target: 5'- cGGAGGC-GCcgGCgGGAGCGCgauuugcgUGCCa -3' miRNA: 3'- uUCUUCGaCGa-CGaCUUCGUGa-------ACGG- -5' |
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30041 | 3' | -52.2 | NC_006273.1 | + | 16308 | 0.68 | 0.965709 |
Target: 5'- aGAGAuuCUGCUGCUGu-GCGCgcGUCa -3' miRNA: 3'- -UUCUucGACGACGACuuCGUGaaCGG- -5' |
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30041 | 3' | -52.2 | NC_006273.1 | + | 206787 | 0.68 | 0.953542 |
Target: 5'- aGAGGAGCUGCcGCacaccgccucgcuuaGAGCGCUgGCCg -3' miRNA: 3'- -UUCUUCGACGaCGac-------------UUCGUGAaCGG- -5' |
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30041 | 3' | -52.2 | NC_006273.1 | + | 42526 | 0.78 | 0.53361 |
Target: 5'- ----cGuCUGCUGUUGAcAGCACUUGCCa -3' miRNA: 3'- uucuuC-GACGACGACU-UCGUGAACGG- -5' |
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30041 | 3' | -52.2 | NC_006273.1 | + | 95883 | 0.68 | 0.965709 |
Target: 5'- cAGGAGCgcuacgcggaGCUGCaGAAGCGCaagaGCCa -3' miRNA: 3'- uUCUUCGa---------CGACGaCUUCGUGaa--CGG- -5' |
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30041 | 3' | -52.2 | NC_006273.1 | + | 8787 | 0.73 | 0.780147 |
Target: 5'- aAAGAGG-UGCUGCUGAAGUAagacgUGUCa -3' miRNA: 3'- -UUCUUCgACGACGACUUCGUga---ACGG- -5' |
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30041 | 3' | -52.2 | NC_006273.1 | + | 202636 | 0.69 | 0.946261 |
Target: 5'- ----cGCUGCcgcaguUGCUGGAGCGCg-GCCu -3' miRNA: 3'- uucuuCGACG------ACGACUUCGUGaaCGG- -5' |
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30041 | 3' | -52.2 | NC_006273.1 | + | 103892 | 0.68 | 0.965709 |
Target: 5'- cGAGGAGUUGCUGUUGca-CACcacgGCCg -3' miRNA: 3'- -UUCUUCGACGACGACuucGUGaa--CGG- -5' |
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30041 | 3' | -52.2 | NC_006273.1 | + | 5706 | 0.68 | 0.971882 |
Target: 5'- cGGGGAcCUGUUGCUcuGGCGCUUcGCCc -3' miRNA: 3'- -UUCUUcGACGACGAcuUCGUGAA-CGG- -5' |
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30041 | 3' | -52.2 | NC_006273.1 | + | 4944 | 0.73 | 0.798896 |
Target: 5'- cGAGgcGCUGCU-CUGAAGCcaagUGCCg -3' miRNA: 3'- -UUCuuCGACGAcGACUUCGuga-ACGG- -5' |
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30041 | 3' | -52.2 | NC_006273.1 | + | 201075 | 0.7 | 0.920674 |
Target: 5'- cGAGGAGCUGUaccUGCgccugGAcGGCACccugUGCCu -3' miRNA: 3'- -UUCUUCGACG---ACGa----CU-UCGUGa---ACGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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