Results 21 - 40 of 65 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30041 | 3' | -52.2 | NC_006273.1 | + | 202474 | 0.67 | 0.979578 |
Target: 5'- uGGAAGCUGCUGgUGGugacccagGGuCAgUUGCg -3' miRNA: 3'- uUCUUCGACGACgACU--------UC-GUgAACGg -5' |
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30041 | 3' | -52.2 | NC_006273.1 | + | 80059 | 0.68 | 0.968904 |
Target: 5'- uGAGAcGCUGCaugaGCUGGuAGCGCUUGa- -3' miRNA: 3'- -UUCUuCGACGa---CGACU-UCGUGAACgg -5' |
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30041 | 3' | -52.2 | NC_006273.1 | + | 95883 | 0.68 | 0.965709 |
Target: 5'- cAGGAGCgcuacgcggaGCUGCaGAAGCGCaagaGCCa -3' miRNA: 3'- uUCUUCGa---------CGACGaCUUCGUGaa--CGG- -5' |
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30041 | 3' | -52.2 | NC_006273.1 | + | 119455 | 0.66 | 0.987254 |
Target: 5'- uGAGcGGCgGaCUGCUGAcGCGCUUugugcagcGCCa -3' miRNA: 3'- -UUCuUCGaC-GACGACUuCGUGAA--------CGG- -5' |
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30041 | 3' | -52.2 | NC_006273.1 | + | 192793 | 0.67 | 0.977211 |
Target: 5'- cAGGAGCguugcaaGCUGCUGGucaaggagcuGCGCaugUGCCu -3' miRNA: 3'- uUCUUCGa------CGACGACUu---------CGUGa--ACGG- -5' |
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30041 | 3' | -52.2 | NC_006273.1 | + | 16308 | 0.68 | 0.965709 |
Target: 5'- aGAGAuuCUGCUGCUGu-GCGCgcGUCa -3' miRNA: 3'- -UUCUucGACGACGACuuCGUGaaCGG- -5' |
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30041 | 3' | -52.2 | NC_006273.1 | + | 32030 | 0.66 | 0.987254 |
Target: 5'- -cGAugguGCUGCUGUUGGGauacGUGCUgGCCa -3' miRNA: 3'- uuCUu---CGACGACGACUU----CGUGAaCGG- -5' |
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30041 | 3' | -52.2 | NC_006273.1 | + | 201950 | 0.68 | 0.958639 |
Target: 5'- --cAAGCUGCgccgggGCUGucGCGCgccGCCg -3' miRNA: 3'- uucUUCGACGa-----CGACuuCGUGaa-CGG- -5' |
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30041 | 3' | -52.2 | NC_006273.1 | + | 117339 | 0.67 | 0.983757 |
Target: 5'- -uGuuGCUGCUGCUGAuuggaaccCGCgUGCCc -3' miRNA: 3'- uuCuuCGACGACGACUuc------GUGaACGG- -5' |
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30041 | 3' | -52.2 | NC_006273.1 | + | 121621 | 0.68 | 0.954754 |
Target: 5'- -cGggGUUGCucuUGCUGAgcugcaugAGCACggcGCCg -3' miRNA: 3'- uuCuuCGACG---ACGACU--------UCGUGaa-CGG- -5' |
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30041 | 3' | -52.2 | NC_006273.1 | + | 5706 | 0.68 | 0.971882 |
Target: 5'- cGGGGAcCUGUUGCUcuGGCGCUUcGCCc -3' miRNA: 3'- -UUCUUcGACGACGAcuUCGUGAA-CGG- -5' |
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30041 | 3' | -52.2 | NC_006273.1 | + | 2100 | 0.68 | 0.968904 |
Target: 5'- cGGAGGC-GCcgGCgGGAGCGCgauuugcgUGCCa -3' miRNA: 3'- uUCUUCGaCGa-CGaCUUCGUGa-------ACGG- -5' |
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30041 | 3' | -52.2 | NC_006273.1 | + | 1913 | 0.66 | 0.988769 |
Target: 5'- ----uGCUGCgGCUGGcuGGCGCUgggcgcggugcUGCCc -3' miRNA: 3'- uucuuCGACGaCGACU--UCGUGA-----------ACGG- -5' |
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30041 | 3' | -52.2 | NC_006273.1 | + | 164267 | 0.66 | 0.99014 |
Target: 5'- -cGAGGCgaaacUGgUGCUGGcGGCGCcgggUGCCa -3' miRNA: 3'- uuCUUCG-----ACgACGACU-UCGUGa---ACGG- -5' |
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30041 | 3' | -52.2 | NC_006273.1 | + | 103892 | 0.68 | 0.965709 |
Target: 5'- cGAGGAGUUGCUGUUGca-CACcacgGCCg -3' miRNA: 3'- -UUCUUCGACGACGACuucGUGaa--CGG- -5' |
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30041 | 3' | -52.2 | NC_006273.1 | + | 112846 | 0.67 | 0.977211 |
Target: 5'- cAGGAGCUGCUGCUc-GGCGug-GUCa -3' miRNA: 3'- uUCUUCGACGACGAcuUCGUgaaCGG- -5' |
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30041 | 3' | -52.2 | NC_006273.1 | + | 196993 | 0.68 | 0.968904 |
Target: 5'- cGGAGGC-GCcgGCgGGAGCGCgauuugcgUGCCa -3' miRNA: 3'- uUCUUCGaCGa-CGaCUUCGUGa-------ACGG- -5' |
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30041 | 3' | -52.2 | NC_006273.1 | + | 111145 | 0.7 | 0.908678 |
Target: 5'- cGGAGGCUGCUGUUGuAGGUACa---- -3' miRNA: 3'- uUCUUCGACGACGAC-UUCGUGaacgg -5' |
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30041 | 3' | -52.2 | NC_006273.1 | + | 61654 | 0.66 | 0.99014 |
Target: 5'- --aGAGCaGCUGCg--GGCACggGCCa -3' miRNA: 3'- uucUUCGaCGACGacuUCGUGaaCGG- -5' |
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30041 | 3' | -52.2 | NC_006273.1 | + | 148650 | 0.66 | 0.991019 |
Target: 5'- uGGAcGCgGCgGCUGAGGUGCUcucguggugcggccUGCCc -3' miRNA: 3'- uUCUuCGaCGaCGACUUCGUGA--------------ACGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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