miRNA display CGI


Results 1 - 20 of 303 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30041 5' -58.1 NC_006273.1 + 127985 0.66 0.901477
Target:  5'- uGCGGUaUGCggCGCGCCGCA-CcGCc-- -3'
miRNA:   3'- -CGCCG-ACGa-GCGCGGCGUuGuCGuug -5'
30041 5' -58.1 NC_006273.1 + 52534 0.66 0.901477
Target:  5'- gGgGGCcGUU-GUGCUGCAGCAGCcgAGCu -3'
miRNA:   3'- -CgCCGaCGAgCGCGGCGUUGUCG--UUG- -5'
30041 5' -58.1 NC_006273.1 + 26628 0.66 0.901477
Target:  5'- cGUGGacguUGUUCGUgGCCuGCAACGGCGugGCu -3'
miRNA:   3'- -CGCCg---ACGAGCG-CGG-CGUUGUCGU--UG- -5'
30041 5' -58.1 NC_006273.1 + 33598 0.66 0.901477
Target:  5'- cGUGGacgUGUUUGCGaaaCCGCGACAGUucucGACg -3'
miRNA:   3'- -CGCCg--ACGAGCGC---GGCGUUGUCG----UUG- -5'
30041 5' -58.1 NC_006273.1 + 122567 0.66 0.901477
Target:  5'- uGCGGUUccgucuccggGgaCGCcaGUCGCAugGGCAGCa -3'
miRNA:   3'- -CGCCGA----------CgaGCG--CGGCGUugUCGUUG- -5'
30041 5' -58.1 NC_006273.1 + 164585 0.66 0.901477
Target:  5'- -aGGCcGCUgGCGCUGCcgucGCAGUAc- -3'
miRNA:   3'- cgCCGaCGAgCGCGGCGu---UGUCGUug -5'
30041 5' -58.1 NC_006273.1 + 54940 0.66 0.901477
Target:  5'- -gGGCUGCagUCGgGUgGUGGCGGCggUg -3'
miRNA:   3'- cgCCGACG--AGCgCGgCGUUGUCGuuG- -5'
30041 5' -58.1 NC_006273.1 + 93013 0.66 0.901477
Target:  5'- aGCGGCUGCggaaCGCGgCCcgggcccgauGCcACGGCGc- -3'
miRNA:   3'- -CGCCGACGa---GCGC-GG----------CGuUGUCGUug -5'
30041 5' -58.1 NC_006273.1 + 131630 0.66 0.901477
Target:  5'- cGCGGUUGCUCGaguaccgGCgCGUggUGGCuuACg -3'
miRNA:   3'- -CGCCGACGAGCg------CG-GCGuuGUCGu-UG- -5'
30041 5' -58.1 NC_006273.1 + 39828 0.66 0.895214
Target:  5'- cGgGGCUcaGCgUGUGgCGCGGCGGCGAg -3'
miRNA:   3'- -CgCCGA--CGaGCGCgGCGUUGUCGUUg -5'
30041 5' -58.1 NC_006273.1 + 8671 0.66 0.895214
Target:  5'- cGCaGGC-GCUgGCGuucCCGUAGCGGguACg -3'
miRNA:   3'- -CG-CCGaCGAgCGC---GGCGUUGUCguUG- -5'
30041 5' -58.1 NC_006273.1 + 70147 0.66 0.895214
Target:  5'- uGCGGCgaugGCUCGCcgGCCGUGuacACGuGCGu- -3'
miRNA:   3'- -CGCCGa---CGAGCG--CGGCGU---UGU-CGUug -5'
30041 5' -58.1 NC_006273.1 + 86537 0.66 0.888736
Target:  5'- cGCGGCaGCg---GCgGCAACAGcCAGCg -3'
miRNA:   3'- -CGCCGaCGagcgCGgCGUUGUC-GUUG- -5'
30041 5' -58.1 NC_006273.1 + 172679 0.66 0.888736
Target:  5'- aGCcGUUGCaCGCGUCGCGGCGuauGCAAg -3'
miRNA:   3'- -CGcCGACGaGCGCGGCGUUGU---CGUUg -5'
30041 5' -58.1 NC_006273.1 + 167669 0.66 0.888736
Target:  5'- aGCGGUUGggCGCGuuGaucuaggccCAAgAGCAGCu -3'
miRNA:   3'- -CGCCGACgaGCGCggC---------GUUgUCGUUG- -5'
30041 5' -58.1 NC_006273.1 + 87692 0.66 0.888736
Target:  5'- gGUGGUgGCg-GUGgUGCAGCGGCGGCu -3'
miRNA:   3'- -CGCCGaCGagCGCgGCGUUGUCGUUG- -5'
30041 5' -58.1 NC_006273.1 + 105281 0.66 0.888736
Target:  5'- uGCaGGCUGaggUCGCGCgGCA--GGCAGg -3'
miRNA:   3'- -CG-CCGACg--AGCGCGgCGUugUCGUUg -5'
30041 5' -58.1 NC_006273.1 + 202021 0.66 0.888736
Target:  5'- --cGCUGCgacacggggaCGCGCCGCAggaucGCAcGCGGCu -3'
miRNA:   3'- cgcCGACGa---------GCGCGGCGU-----UGU-CGUUG- -5'
30041 5' -58.1 NC_006273.1 + 139489 0.66 0.888736
Target:  5'- gGUGGCU-CUUGCGCUucuGCAGCuccgcGUAGCg -3'
miRNA:   3'- -CGCCGAcGAGCGCGG---CGUUGu----CGUUG- -5'
30041 5' -58.1 NC_006273.1 + 118343 0.66 0.888736
Target:  5'- gGCGGCaacgGC-CGgGCCcuCGACGGCAGg -3'
miRNA:   3'- -CGCCGa---CGaGCgCGGc-GUUGUCGUUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.