miRNA display CGI


Results 1 - 20 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30042 3' -55.2 NC_006273.1 + 185059 0.66 0.973371
Target:  5'- gCGgCGGGcaGCAUCGCGuuGCUCA-GCc -3'
miRNA:   3'- gGUgGUCC--CGUAGCGUguCGAGUuCG- -5'
30042 3' -55.2 NC_006273.1 + 130696 0.66 0.973371
Target:  5'- aCGCCu--GCAgcUCGCGCAGCUCcacguccucgcuAGGCu -3'
miRNA:   3'- gGUGGuccCGU--AGCGUGUCGAG------------UUCG- -5'
30042 3' -55.2 NC_006273.1 + 231747 0.66 0.973371
Target:  5'- cCCACCucGGCAU-GC-CGGCgcCGGGCg -3'
miRNA:   3'- -GGUGGucCCGUAgCGuGUCGa-GUUCG- -5'
30042 3' -55.2 NC_006273.1 + 185276 0.66 0.973371
Target:  5'- aCCGCagCGGuGGCuggagaaGCGCAGCgucggCGAGCg -3'
miRNA:   3'- -GGUG--GUC-CCGuag----CGUGUCGa----GUUCG- -5'
30042 3' -55.2 NC_006273.1 + 214985 0.66 0.973371
Target:  5'- -aACUGGGGCGaCGcCGCuGCUguGGCa -3'
miRNA:   3'- ggUGGUCCCGUaGC-GUGuCGAguUCG- -5'
30042 3' -55.2 NC_006273.1 + 1982 0.66 0.973371
Target:  5'- ---aCGGGGacgaCGUCGCGcCAGCggCGAGCg -3'
miRNA:   3'- ggugGUCCC----GUAGCGU-GUCGa-GUUCG- -5'
30042 3' -55.2 NC_006273.1 + 119805 0.66 0.973371
Target:  5'- gCGCCAGuucGGCguuacggucaGUCGCACGGCcCAguGGUg -3'
miRNA:   3'- gGUGGUC---CCG----------UAGCGUGUCGaGU--UCG- -5'
30042 3' -55.2 NC_006273.1 + 190145 0.66 0.970646
Target:  5'- gCCGCC-GGGCG--GCACGGg-CAAGUg -3'
miRNA:   3'- -GGUGGuCCCGUagCGUGUCgaGUUCG- -5'
30042 3' -55.2 NC_006273.1 + 40077 0.66 0.970646
Target:  5'- gCgACguGcGGCG-CGCACGGCgaaAAGCa -3'
miRNA:   3'- -GgUGguC-CCGUaGCGUGUCGag-UUCG- -5'
30042 3' -55.2 NC_006273.1 + 64025 0.66 0.970646
Target:  5'- gCCACCAuGGGCGcggcgguuuuggUgGCGCGGcCUCcuccucucugcuGAGCu -3'
miRNA:   3'- -GGUGGU-CCCGU------------AgCGUGUC-GAG------------UUCG- -5'
30042 3' -55.2 NC_006273.1 + 45559 0.66 0.970646
Target:  5'- gCCACCc-GGCGUgGCcgagGCGGUaCAAGCu -3'
miRNA:   3'- -GGUGGucCCGUAgCG----UGUCGaGUUCG- -5'
30042 3' -55.2 NC_006273.1 + 94374 0.66 0.970646
Target:  5'- aCCAuCCGGGGCcgUGgGCcgGGCacCGGGCg -3'
miRNA:   3'- -GGU-GGUCCCGuaGCgUG--UCGa-GUUCG- -5'
30042 3' -55.2 NC_006273.1 + 81280 0.66 0.970646
Target:  5'- aCACgGcguauGGCGUC-CGCGGUUCGGGCa -3'
miRNA:   3'- gGUGgUc----CCGUAGcGUGUCGAGUUCG- -5'
30042 3' -55.2 NC_006273.1 + 139 0.66 0.970646
Target:  5'- gCgACguGcGGCG-CGCACGGCgaaAAGCa -3'
miRNA:   3'- -GgUGguC-CCGUaGCGUGUCGag-UUCG- -5'
30042 3' -55.2 NC_006273.1 + 124795 0.66 0.970646
Target:  5'- --uCCAGGGCA--GCAcCAGCUCccacuGGCc -3'
miRNA:   3'- gguGGUCCCGUagCGU-GUCGAGu----UCG- -5'
30042 3' -55.2 NC_006273.1 + 209453 0.66 0.970646
Target:  5'- -aGCCAGGGCcgcuUCGUggaaaugcgagACGGCUagaCAGGUa -3'
miRNA:   3'- ggUGGUCCCGu---AGCG-----------UGUCGA---GUUCG- -5'
30042 3' -55.2 NC_006273.1 + 234970 0.66 0.970646
Target:  5'- gCgACguGcGGCG-CGCACGGCgaaAAGCa -3'
miRNA:   3'- -GgUGguC-CCGUaGCGUGUCGag-UUCG- -5'
30042 3' -55.2 NC_006273.1 + 232721 0.66 0.967727
Target:  5'- aCCACCGuGGCcaaguccaGUCcCAgAGCUUGAGCg -3'
miRNA:   3'- -GGUGGUcCCG--------UAGcGUgUCGAGUUCG- -5'
30042 3' -55.2 NC_006273.1 + 213898 0.66 0.967727
Target:  5'- gCCACCGGuGGCGgcaugaGCcacCAGCU-GAGCa -3'
miRNA:   3'- -GGUGGUC-CCGUag----CGu--GUCGAgUUCG- -5'
30042 3' -55.2 NC_006273.1 + 148656 0.66 0.966812
Target:  5'- gCGCCGGaGGCcggccuggaggucugCGCGCAGCUgcugGAGCu -3'
miRNA:   3'- gGUGGUC-CCGua-------------GCGUGUCGAg---UUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.