miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30042 5' -56.8 NC_006273.1 + 118687 0.66 0.944341
Target:  5'- cGGACUgacGGGCCCgCGCGAaa-CCAGCu -3'
miRNA:   3'- -CUUGA---CCUGGGgGUGCUcuaGGUCGu -5'
30042 5' -56.8 NC_006273.1 + 134400 0.66 0.944341
Target:  5'- cGAACUGGACgCCauggACGAGGacgaacuaCAGCAa -3'
miRNA:   3'- -CUUGACCUGgGGg---UGCUCUag------GUCGU- -5'
30042 5' -56.8 NC_006273.1 + 81132 0.66 0.935197
Target:  5'- ----cGGACCUCguaCACGGGAaaacccugcUCCAGCAg -3'
miRNA:   3'- cuugaCCUGGGG---GUGCUCU---------AGGUCGU- -5'
30042 5' -56.8 NC_006273.1 + 185776 0.66 0.930288
Target:  5'- cGAGCUGGcGCCCaCCAUGAagGAUUuucugCGGCAu -3'
miRNA:   3'- -CUUGACC-UGGG-GGUGCU--CUAG-----GUCGU- -5'
30042 5' -56.8 NC_006273.1 + 20618 0.66 0.919792
Target:  5'- aGAACUGGcgaucauaccGCCggcaCCCACGGuGcUCCGGCAg -3'
miRNA:   3'- -CUUGACC----------UGG----GGGUGCU-CuAGGUCGU- -5'
30042 5' -56.8 NC_006273.1 + 81154 0.67 0.914206
Target:  5'- gGAGCUGGGCggCCgCACGAagcGGUCCAcGUAg -3'
miRNA:   3'- -CUUGACCUG--GGgGUGCU---CUAGGU-CGU- -5'
30042 5' -56.8 NC_006273.1 + 109309 0.67 0.914206
Target:  5'- cGAGgUGGACCgCU---GGAUCCGGCAc -3'
miRNA:   3'- -CUUgACCUGGgGGugcUCUAGGUCGU- -5'
30042 5' -56.8 NC_006273.1 + 61897 0.67 0.896108
Target:  5'- cAGCUGGACCgcuuCCUGCGAca-CCAGCAc -3'
miRNA:   3'- cUUGACCUGG----GGGUGCUcuaGGUCGU- -5'
30042 5' -56.8 NC_006273.1 + 226704 0.67 0.889636
Target:  5'- uGGCUGcGuACCCgCUACGGGAacgCCAGCGc -3'
miRNA:   3'- cUUGAC-C-UGGG-GGUGCUCUa--GGUCGU- -5'
30042 5' -56.8 NC_006273.1 + 142653 0.67 0.888977
Target:  5'- aGAGCUaccgccugggccaGGGCUCCUucgGCGAGGUCUGGCc -3'
miRNA:   3'- -CUUGA-------------CCUGGGGG---UGCUCUAGGUCGu -5'
30042 5' -56.8 NC_006273.1 + 230613 0.67 0.882951
Target:  5'- cAGCUGGACCUUCugG-GA-CCAGUg -3'
miRNA:   3'- cUUGACCUGGGGGugCuCUaGGUCGu -5'
30042 5' -56.8 NC_006273.1 + 11002 0.68 0.876055
Target:  5'- aGugUGGcAUCCCCAUGAGcgcggCCAGUAu -3'
miRNA:   3'- cUugACC-UGGGGGUGCUCua---GGUCGU- -5'
30042 5' -56.8 NC_006273.1 + 5512 0.68 0.846463
Target:  5'- uAACUGGAacaCCACGcGGUCCGGCu -3'
miRNA:   3'- cUUGACCUgggGGUGCuCUAGGUCGu -5'
30042 5' -56.8 NC_006273.1 + 179749 0.69 0.830541
Target:  5'- aGAACUGGGCUaugUCCGCuucGAGA-CCGGCGg -3'
miRNA:   3'- -CUUGACCUGG---GGGUG---CUCUaGGUCGU- -5'
30042 5' -56.8 NC_006273.1 + 68210 0.69 0.82149
Target:  5'- gGAGCUGGcgggucggaucacGCCCCCGCccgccGAcuUCCAGCGg -3'
miRNA:   3'- -CUUGACC-------------UGGGGGUGcu---CU--AGGUCGU- -5'
30042 5' -56.8 NC_006273.1 + 140902 0.69 0.813937
Target:  5'- gGAACcgGGACCCCgguGCGGGGgucCCAGCc -3'
miRNA:   3'- -CUUGa-CCUGGGGg--UGCUCUa--GGUCGu -5'
30042 5' -56.8 NC_006273.1 + 86846 0.7 0.778919
Target:  5'- aAACUGGAgCUCCACGGugugauggcGAUCgCAGCGa -3'
miRNA:   3'- cUUGACCUgGGGGUGCU---------CUAG-GUCGU- -5'
30042 5' -56.8 NC_006273.1 + 6457 0.7 0.778919
Target:  5'- -cACUGGACCgCCACGuauUCUAGCc -3'
miRNA:   3'- cuUGACCUGGgGGUGCucuAGGUCGu -5'
30042 5' -56.8 NC_006273.1 + 178860 0.7 0.760632
Target:  5'- cGAAggGGA-CCCCGCGGGG-CCGGCAu -3'
miRNA:   3'- -CUUgaCCUgGGGGUGCUCUaGGUCGU- -5'
30042 5' -56.8 NC_006273.1 + 61993 0.7 0.751322
Target:  5'- aAGCUGuugcaGACCCUgCGCGAGAUCCAGa- -3'
miRNA:   3'- cUUGAC-----CUGGGG-GUGCUCUAGGUCgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.