miRNA display CGI


Results 1 - 20 of 113 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30049 3' -56.4 NC_006273.1 + 164365 0.65 0.969614
Target:  5'- cGCCAaaGGCGGUGGAgacuaaugcagaguCGGCuGUCCuUGa -3'
miRNA:   3'- cCGGU--CUGCCAUCU--------------GCCG-CAGGuACc -5'
30049 3' -56.4 NC_006273.1 + 218325 0.66 0.967596
Target:  5'- uGCCAGAUGGUAaACG-CGUCCc--- -3'
miRNA:   3'- cCGGUCUGCCAUcUGCcGCAGGuacc -5'
30049 3' -56.4 NC_006273.1 + 119022 0.66 0.967596
Target:  5'- uGGCUucGGACaGGggGGuCGGCGUCgGUGu -3'
miRNA:   3'- -CCGG--UCUG-CCa-UCuGCCGCAGgUACc -5'
30049 3' -56.4 NC_006273.1 + 144312 0.66 0.967596
Target:  5'- uGGCgGcguugugcgcGGCGGUGGGCugucaGGCGUCCGa-- -3'
miRNA:   3'- -CCGgU----------CUGCCAUCUG-----CCGCAGGUacc -5'
30049 3' -56.4 NC_006273.1 + 122006 0.66 0.967596
Target:  5'- cGCC--GCGGUGGcAUGGCGUCgAgucGGg -3'
miRNA:   3'- cCGGucUGCCAUC-UGCCGCAGgUa--CC- -5'
30049 3' -56.4 NC_006273.1 + 166489 0.66 0.967596
Target:  5'- uGGUgGcGACGGUAGuguuugucgugGCGGCGgcagCgGUGGu -3'
miRNA:   3'- -CCGgU-CUGCCAUC-----------UGCCGCa---GgUACC- -5'
30049 3' -56.4 NC_006273.1 + 73753 0.66 0.967596
Target:  5'- cGGCCgAGGCccGGcAGcggcgccgccaGCGGCGaCCAUGGu -3'
miRNA:   3'- -CCGG-UCUG--CCaUC-----------UGCCGCaGGUACC- -5'
30049 3' -56.4 NC_006273.1 + 116066 0.66 0.967596
Target:  5'- aGGCCAGuAgGGUu-GCGGCGUCUu--- -3'
miRNA:   3'- -CCGGUC-UgCCAucUGCCGCAGGuacc -5'
30049 3' -56.4 NC_006273.1 + 61575 0.66 0.9673
Target:  5'- cGGCCGGgucgcGCGGccguuUGGccaccgcGCGcGCGUCCAUGa -3'
miRNA:   3'- -CCGGUC-----UGCC-----AUC-------UGC-CGCAGGUACc -5'
30049 3' -56.4 NC_006273.1 + 34934 0.66 0.96455
Target:  5'- gGGUUAG-CGGUGGAggUGGCGgcugaUCCAcGGg -3'
miRNA:   3'- -CCGGUCuGCCAUCU--GCCGC-----AGGUaCC- -5'
30049 3' -56.4 NC_006273.1 + 109693 0.66 0.96455
Target:  5'- cGGCgGGaACGGUAG-CGGgGaCgGUGGc -3'
miRNA:   3'- -CCGgUC-UGCCAUCuGCCgCaGgUACC- -5'
30049 3' -56.4 NC_006273.1 + 73492 0.66 0.96455
Target:  5'- cGGCguGcACGGcggAGACGGCGgaugacggUgAUGGg -3'
miRNA:   3'- -CCGguC-UGCCa--UCUGCCGCa-------GgUACC- -5'
30049 3' -56.4 NC_006273.1 + 29129 0.66 0.96455
Target:  5'- gGGCCAGaagagGCGGccuuGACGGCGU---UGGc -3'
miRNA:   3'- -CCGGUC-----UGCCau--CUGCCGCAgguACC- -5'
30049 3' -56.4 NC_006273.1 + 41264 0.66 0.96455
Target:  5'- cGGCCuccgagGGGUGGUGGAcaCGGUGUuuugagaagCCGUGGa -3'
miRNA:   3'- -CCGG------UCUGCCAUCU--GCCGCA---------GGUACC- -5'
30049 3' -56.4 NC_006273.1 + 174806 0.66 0.96455
Target:  5'- aGGCUGGAuCGGUcc-CGGUGUCUucuAUGGa -3'
miRNA:   3'- -CCGGUCU-GCCAucuGCCGCAGG---UACC- -5'
30049 3' -56.4 NC_006273.1 + 47201 0.66 0.96455
Target:  5'- cGGCagAGAa-GcAGACGGCGagCCAUGGa -3'
miRNA:   3'- -CCGg-UCUgcCaUCUGCCGCa-GGUACC- -5'
30049 3' -56.4 NC_006273.1 + 164388 0.66 0.96455
Target:  5'- aGCCuaaguGACGGUgAGAUccaGGCuGUCCGUGc -3'
miRNA:   3'- cCGGu----CUGCCA-UCUG---CCG-CAGGUACc -5'
30049 3' -56.4 NC_006273.1 + 177503 0.66 0.964235
Target:  5'- aGGCUccGGGCGuGUGGcgccagcgaaccgGCGGCGUUgaaCGUGGu -3'
miRNA:   3'- -CCGG--UCUGC-CAUC-------------UGCCGCAG---GUACC- -5'
30049 3' -56.4 NC_006273.1 + 125837 0.66 0.96131
Target:  5'- uGGCCu--UGGUGG-CGGCcUCCGUGu -3'
miRNA:   3'- -CCGGucuGCCAUCuGCCGcAGGUACc -5'
30049 3' -56.4 NC_006273.1 + 48039 0.66 0.96131
Target:  5'- cGCCGGacaugGCGGU-GACGGCG-CCGcUGa -3'
miRNA:   3'- cCGGUC-----UGCCAuCUGCCGCaGGU-ACc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.