miRNA display CGI


Results 1 - 20 of 130 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30049 5' -53.2 NC_006273.1 + 20950 0.66 0.994174
Target:  5'- uGGCCGU-GACGACGUCGcuGGa---- -3'
miRNA:   3'- -UCGGCAuCUGCUGCGGCuuUCacagg -5'
30049 5' -53.2 NC_006273.1 + 81825 0.66 0.994174
Target:  5'- cGCgGUAGAUGgcuugaccuGCGCCGAgcGAGUG-Cg -3'
miRNA:   3'- uCGgCAUCUGC---------UGCGGCU--UUCACaGg -5'
30049 5' -53.2 NC_006273.1 + 85733 0.66 0.994174
Target:  5'- cGCCGcGGGCGGCGUgGAGGGagaaacCCg -3'
miRNA:   3'- uCGGCaUCUGCUGCGgCUUUCaca---GG- -5'
30049 5' -53.2 NC_006273.1 + 180282 0.66 0.994174
Target:  5'- gAGCCGcGGACGcCGUCGGuaccGUcUCCa -3'
miRNA:   3'- -UCGGCaUCUGCuGCGGCUuu--CAcAGG- -5'
30049 5' -53.2 NC_006273.1 + 95519 0.66 0.994174
Target:  5'- cGGCCGgAGACuGCGCCGAcAGcucgaccaUCCg -3'
miRNA:   3'- -UCGGCaUCUGcUGCGGCUuUCac------AGG- -5'
30049 5' -53.2 NC_006273.1 + 193968 0.66 0.994174
Target:  5'- gGGCCauguGugGugGCaGAuggcGGUGUCCa -3'
miRNA:   3'- -UCGGcau-CugCugCGgCUu---UCACAGG- -5'
30049 5' -53.2 NC_006273.1 + 71053 0.66 0.994092
Target:  5'- aGGCUGUcAGA--GCGCCGGGagcaucuGGUGUUCa -3'
miRNA:   3'- -UCGGCA-UCUgcUGCGGCUU-------UCACAGG- -5'
30049 5' -53.2 NC_006273.1 + 50822 0.66 0.994092
Target:  5'- cGGCCGc-GcCGACGCCGAGgauugcuGGaaacccgcaUGUCCg -3'
miRNA:   3'- -UCGGCauCuGCUGCGGCUU-------UC---------ACAGG- -5'
30049 5' -53.2 NC_006273.1 + 124084 0.66 0.993309
Target:  5'- uGGUgGUAGugGugGCgagGAAAGUGagCg -3'
miRNA:   3'- -UCGgCAUCugCugCGg--CUUUCACagG- -5'
30049 5' -53.2 NC_006273.1 + 155443 0.66 0.993309
Target:  5'- cGCCGUGcccGGCGACGCgGGuucuGUGgcggCUa -3'
miRNA:   3'- uCGGCAU---CUGCUGCGgCUuu--CACa---GG- -5'
30049 5' -53.2 NC_006273.1 + 38970 0.66 0.993309
Target:  5'- aGGUCGUAGACGAacaCGCgGAAcccGGcGcCCa -3'
miRNA:   3'- -UCGGCAUCUGCU---GCGgCUU---UCaCaGG- -5'
30049 5' -53.2 NC_006273.1 + 37660 0.66 0.993309
Target:  5'- cGCUGUuGACGGCGC-GAGAGcccGUCg -3'
miRNA:   3'- uCGGCAuCUGCUGCGgCUUUCa--CAGg -5'
30049 5' -53.2 NC_006273.1 + 71104 0.66 0.993309
Target:  5'- uGGCCGUGGcaccCGGCGCCGccAGca-CCa -3'
miRNA:   3'- -UCGGCAUCu---GCUGCGGCuuUCacaGG- -5'
30049 5' -53.2 NC_006273.1 + 228217 0.66 0.993309
Target:  5'- cGCCGUugGGAaagaACGCCG-AAGUG-CCu -3'
miRNA:   3'- uCGGCA--UCUgc--UGCGGCuUUCACaGG- -5'
30049 5' -53.2 NC_006273.1 + 233863 0.66 0.993309
Target:  5'- aGGUCGUAGACGAacaCGCgGAAcccGGcGcCCa -3'
miRNA:   3'- -UCGGCAUCUGCU---GCGgCUU---UCaCaGG- -5'
30049 5' -53.2 NC_006273.1 + 5880 0.66 0.992345
Target:  5'- gGGUCGUGGGuCGuCGCUGAAaauGGcUGUCg -3'
miRNA:   3'- -UCGGCAUCU-GCuGCGGCUU---UC-ACAGg -5'
30049 5' -53.2 NC_006273.1 + 193920 0.66 0.992345
Target:  5'- cGCCGUguugugagcAGACGACGuuGGAugcGGgacGUCg -3'
miRNA:   3'- uCGGCA---------UCUGCUGCggCUU---UCa--CAGg -5'
30049 5' -53.2 NC_006273.1 + 97608 0.66 0.992345
Target:  5'- --gCGUcGACGACGCCGAuguacGUGgCCc -3'
miRNA:   3'- ucgGCAuCUGCUGCGGCUuu---CACaGG- -5'
30049 5' -53.2 NC_006273.1 + 118787 0.66 0.992345
Target:  5'- cGUCGcGGACGcucugcauCGCCGcAAcGUGUCCu -3'
miRNA:   3'- uCGGCaUCUGCu-------GCGGC-UUuCACAGG- -5'
30049 5' -53.2 NC_006273.1 + 159934 0.66 0.991273
Target:  5'- uGCCGgcGACGGCuccGCCGcagcuaguGGUGUUg -3'
miRNA:   3'- uCGGCauCUGCUG---CGGCuu------UCACAGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.