miRNA display CGI


Results 1 - 13 of 13 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30051 5' -41.5 NC_006273.1 + 115156 0.66 1
Target:  5'- cCUgcacugCCAGGUG-CUUCGGCu- -3'
miRNA:   3'- aGAaa----GGUCCACaGAAGUUGcu -5'
30051 5' -41.5 NC_006273.1 + 55623 0.67 1
Target:  5'- aCUUUCuCGGGUGUgcgucgaccCUUCAcCGAg -3'
miRNA:   3'- aGAAAG-GUCCACA---------GAAGUuGCU- -5'
30051 5' -41.5 NC_006273.1 + 178476 0.68 1
Target:  5'- cCUUUCCAGcGUGgcgauccCUUCGACa- -3'
miRNA:   3'- aGAAAGGUC-CACa------GAAGUUGcu -5'
30051 5' -41.5 NC_006273.1 + 153059 0.69 1
Target:  5'- cUCUUUCCcuaucuGGUGUCcgcCGACGGg -3'
miRNA:   3'- -AGAAAGGu-----CCACAGaa-GUUGCU- -5'
30051 5' -41.5 NC_006273.1 + 145631 0.66 1
Target:  5'- cUCUgggucgCCAGGUGUCUcuacgcUCcuACGAc -3'
miRNA:   3'- -AGAaa----GGUCCACAGA------AGu-UGCU- -5'
30051 5' -41.5 NC_006273.1 + 142663 0.66 1
Target:  5'- cCUgggCCAGGgcucCUUCGGCGAg -3'
miRNA:   3'- aGAaa-GGUCCaca-GAAGUUGCU- -5'
30051 5' -41.5 NC_006273.1 + 184049 0.66 1
Target:  5'- --aUUCCAGGUGg---UAACGAu -3'
miRNA:   3'- agaAAGGUCCACagaaGUUGCU- -5'
30051 5' -41.5 NC_006273.1 + 127487 0.68 1
Target:  5'- aUCag-CCAGGUGU--UCGGCGAu -3'
miRNA:   3'- -AGaaaGGUCCACAgaAGUUGCU- -5'
30051 5' -41.5 NC_006273.1 + 168040 0.7 1
Target:  5'- ----aCCGGGUGuuucuuuUCUUCAACGGg -3'
miRNA:   3'- agaaaGGUCCAC-------AGAAGUUGCU- -5'
30051 5' -41.5 NC_006273.1 + 201120 0.72 0.999988
Target:  5'- ----cCCGGGUGUCgcgacaugUCGACGAc -3'
miRNA:   3'- agaaaGGUCCACAGa-------AGUUGCU- -5'
30051 5' -41.5 NC_006273.1 + 174813 0.73 0.999938
Target:  5'- aUCggUCCcGGUGUCUUCuAugGAg -3'
miRNA:   3'- -AGaaAGGuCCACAGAAG-UugCU- -5'
30051 5' -41.5 NC_006273.1 + 185588 0.95 0.430444
Target:  5'- uUCUUUCCAGGUGUUUUCAACGu -3'
miRNA:   3'- -AGAAAGGUCCACAGAAGUUGCu -5'
30051 5' -41.5 NC_006273.1 + 49843 1.06 0.123218
Target:  5'- cUCUUUCCAGGUGUCUUCAACGAc -3'
miRNA:   3'- -AGAAAGGUCCACAGAAGUUGCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.