miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30056 3' -53.2 NC_006273.1 + 47992 0.66 0.9918
Target:  5'- cGUCCACGUaCAccuCGGCCGGGacUUCUUc -3'
miRNA:   3'- cUAGGUGCAcGU---GCCGGCUU--AAGAGc -5'
30056 3' -53.2 NC_006273.1 + 36296 0.66 0.99066
Target:  5'- cGGUCCACGg----GGCCGAugcUCUCGu -3'
miRNA:   3'- -CUAGGUGCacgugCCGGCUua-AGAGC- -5'
30056 3' -53.2 NC_006273.1 + 164663 0.66 0.9894
Target:  5'- -cUCCAgCGUGUACGugcucggguGCCGggUacaccaUCUCGa -3'
miRNA:   3'- cuAGGU-GCACGUGC---------CGGCuuA------AGAGC- -5'
30056 3' -53.2 NC_006273.1 + 120768 0.66 0.988011
Target:  5'- --gCCAgGUGaaCACGGCCGGAUUgUgGa -3'
miRNA:   3'- cuaGGUgCAC--GUGCCGGCUUAAgAgC- -5'
30056 3' -53.2 NC_006273.1 + 213701 0.67 0.986485
Target:  5'- cGGUCCGaguggcgcagguCGUGCACGucggccaccagcGCCGuggUCUCGg -3'
miRNA:   3'- -CUAGGU------------GCACGUGC------------CGGCuuaAGAGC- -5'
30056 3' -53.2 NC_006273.1 + 16370 0.67 0.984814
Target:  5'- --aCUACGUGC-CGucGCUGGAUUCUCc -3'
miRNA:   3'- cuaGGUGCACGuGC--CGGCUUAAGAGc -5'
30056 3' -53.2 NC_006273.1 + 103457 0.67 0.984814
Target:  5'- uGAUCUugGUGUGCG-CCGugagGUUCUUGc -3'
miRNA:   3'- -CUAGGugCACGUGCcGGCu---UAAGAGC- -5'
30056 3' -53.2 NC_006273.1 + 205277 0.67 0.984814
Target:  5'- --gCCugGcGCucACGGCCGAGUUCg-- -3'
miRNA:   3'- cuaGGugCaCG--UGCCGGCUUAAGagc -5'
30056 3' -53.2 NC_006273.1 + 113520 0.67 0.981006
Target:  5'- cGAUCUAUGUGUACGcGCUGccg-CUCa -3'
miRNA:   3'- -CUAGGUGCACGUGC-CGGCuuaaGAGc -5'
30056 3' -53.2 NC_006273.1 + 167506 0.67 0.978854
Target:  5'- uGAUCCAUGgccGCAgGGCCcgagaucccgGGAUUCUgCGg -3'
miRNA:   3'- -CUAGGUGCa--CGUgCCGG----------CUUAAGA-GC- -5'
30056 3' -53.2 NC_006273.1 + 128958 0.67 0.978854
Target:  5'- -uUCCAUG-GCGuCGGCCGuGUUUUUGa -3'
miRNA:   3'- cuAGGUGCaCGU-GCCGGCuUAAGAGC- -5'
30056 3' -53.2 NC_006273.1 + 73863 0.68 0.976526
Target:  5'- cGUUCGCGUgaGCGCGGCCGAcaug-CGg -3'
miRNA:   3'- cUAGGUGCA--CGUGCCGGCUuaagaGC- -5'
30056 3' -53.2 NC_006273.1 + 222020 0.68 0.974015
Target:  5'- gGGUa-GCGUuuaGCAUGGCCGAAgaCUCGg -3'
miRNA:   3'- -CUAggUGCA---CGUGCCGGCUUaaGAGC- -5'
30056 3' -53.2 NC_006273.1 + 154785 0.68 0.974015
Target:  5'- gGAUaCCAgG-GCACGGUCGAAcgUUUCGu -3'
miRNA:   3'- -CUA-GGUgCaCGUGCCGGCUUa-AGAGC- -5'
30056 3' -53.2 NC_006273.1 + 63175 0.68 0.971315
Target:  5'- cGUCuCGCG-GCGCGGCCGGcgcggcCUCGc -3'
miRNA:   3'- cUAG-GUGCaCGUGCCGGCUuaa---GAGC- -5'
30056 3' -53.2 NC_006273.1 + 212557 0.68 0.967816
Target:  5'- aGAUCCAgGgucucguaauaaGCACGGCCGAAgcggCGg -3'
miRNA:   3'- -CUAGGUgCa-----------CGUGCCGGCUUaagaGC- -5'
30056 3' -53.2 NC_006273.1 + 178007 0.68 0.965321
Target:  5'- -cUCCAUGUGCGCGcCCGAuUUCa-- -3'
miRNA:   3'- cuAGGUGCACGUGCcGGCUuAAGagc -5'
30056 3' -53.2 NC_006273.1 + 105273 0.69 0.958498
Target:  5'- cGUCCAgGUGCA-GGCUGAggUCgcgCGg -3'
miRNA:   3'- cUAGGUgCACGUgCCGGCUuaAGa--GC- -5'
30056 3' -53.2 NC_006273.1 + 42770 0.69 0.950806
Target:  5'- --gCCGCGagucgcauucUGCACcGCCGAcgUCUCGu -3'
miRNA:   3'- cuaGGUGC----------ACGUGcCGGCUuaAGAGC- -5'
30056 3' -53.2 NC_006273.1 + 140853 0.69 0.946625
Target:  5'- ----gGCgGUGCGCGGCCGc-UUCUCGg -3'
miRNA:   3'- cuaggUG-CACGUGCCGGCuuAAGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.