miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30056 3' -53.2 NC_006273.1 + 9426 0.71 0.904872
Target:  5'- -uUUCACGUGCACGcGCCaAAaUCUCa -3'
miRNA:   3'- cuAGGUGCACGUGC-CGGcUUaAGAGc -5'
30056 3' -53.2 NC_006273.1 + 16370 0.67 0.984814
Target:  5'- --aCUACGUGC-CGucGCUGGAUUCUCc -3'
miRNA:   3'- cuaGGUGCACGuGC--CGGCUUAAGAGc -5'
30056 3' -53.2 NC_006273.1 + 36296 0.66 0.99066
Target:  5'- cGGUCCACGg----GGCCGAugcUCUCGu -3'
miRNA:   3'- -CUAGGUGCacgugCCGGCUua-AGAGC- -5'
30056 3' -53.2 NC_006273.1 + 42770 0.69 0.950806
Target:  5'- --gCCGCGagucgcauucUGCACcGCCGAcgUCUCGu -3'
miRNA:   3'- cuaGGUGC----------ACGUGcCGGCUuaAGAGC- -5'
30056 3' -53.2 NC_006273.1 + 47992 0.66 0.9918
Target:  5'- cGUCCACGUaCAccuCGGCCGGGacUUCUUc -3'
miRNA:   3'- cUAGGUGCAcGU---GCCGGCUU--AAGAGc -5'
30056 3' -53.2 NC_006273.1 + 52789 0.71 0.898614
Target:  5'- aGUCCACGgaccGCuCGGucuCCGAGUUCUCa -3'
miRNA:   3'- cUAGGUGCa---CGuGCC---GGCUUAAGAGc -5'
30056 3' -53.2 NC_006273.1 + 57303 1.08 0.009651
Target:  5'- aGAUCCACGUGCACGGCCGAAUUCUCGc -3'
miRNA:   3'- -CUAGGUGCACGUGCCGGCUUAAGAGC- -5'
30056 3' -53.2 NC_006273.1 + 60193 0.69 0.946194
Target:  5'- cAUCCugGUcGCGcCGGCCGGAUUaaaggugCUCa -3'
miRNA:   3'- cUAGGugCA-CGU-GCCGGCUUAA-------GAGc -5'
30056 3' -53.2 NC_006273.1 + 63175 0.68 0.971315
Target:  5'- cGUCuCGCG-GCGCGGCCGGcgcggcCUCGc -3'
miRNA:   3'- cUAG-GUGCaCGUGCCGGCUuaa---GAGC- -5'
30056 3' -53.2 NC_006273.1 + 73863 0.68 0.976526
Target:  5'- cGUUCGCGUgaGCGCGGCCGAcaug-CGg -3'
miRNA:   3'- cUAGGUGCA--CGUGCCGGCUuaagaGC- -5'
30056 3' -53.2 NC_006273.1 + 91042 0.71 0.910902
Target:  5'- --aCCACGUGCACaGUCG---UCUCGg -3'
miRNA:   3'- cuaGGUGCACGUGcCGGCuuaAGAGC- -5'
30056 3' -53.2 NC_006273.1 + 101954 0.7 0.932708
Target:  5'- --cCCGCGUGCGCGcGCCGucgcgucgCUUGa -3'
miRNA:   3'- cuaGGUGCACGUGC-CGGCuuaa----GAGC- -5'
30056 3' -53.2 NC_006273.1 + 103457 0.67 0.984814
Target:  5'- uGAUCUugGUGUGCG-CCGugagGUUCUUGc -3'
miRNA:   3'- -CUAGGugCACGUGCcGGCu---UAAGAGC- -5'
30056 3' -53.2 NC_006273.1 + 105273 0.69 0.958498
Target:  5'- cGUCCAgGUGCA-GGCUGAggUCgcgCGg -3'
miRNA:   3'- cUAGGUgCACGUgCCGGCUuaAGa--GC- -5'
30056 3' -53.2 NC_006273.1 + 113520 0.67 0.981006
Target:  5'- cGAUCUAUGUGUACGcGCUGccg-CUCa -3'
miRNA:   3'- -CUAGGUGCACGUGC-CGGCuuaaGAGc -5'
30056 3' -53.2 NC_006273.1 + 116308 0.7 0.937578
Target:  5'- --cCCGCG-GgACGGCgGggUUCUCu -3'
miRNA:   3'- cuaGGUGCaCgUGCCGgCuuAAGAGc -5'
30056 3' -53.2 NC_006273.1 + 116421 0.74 0.761922
Target:  5'- cGGUCUACGUGgGCGGCU---UUCUCGc -3'
miRNA:   3'- -CUAGGUGCACgUGCCGGcuuAAGAGC- -5'
30056 3' -53.2 NC_006273.1 + 120508 0.71 0.904872
Target:  5'- cGUCCuaagcGCGUGCGCGGCgGGuggCUCa -3'
miRNA:   3'- cUAGG-----UGCACGUGCCGgCUuaaGAGc -5'
30056 3' -53.2 NC_006273.1 + 120768 0.66 0.988011
Target:  5'- --gCCAgGUGaaCACGGCCGGAUUgUgGa -3'
miRNA:   3'- cuaGGUgCAC--GUGCCGGCUUAAgAgC- -5'
30056 3' -53.2 NC_006273.1 + 128958 0.67 0.978854
Target:  5'- -uUCCAUG-GCGuCGGCCGuGUUUUUGa -3'
miRNA:   3'- cuAGGUGCaCGU-GCCGGCuUAAGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.