Results 21 - 31 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30056 | 3' | -53.2 | NC_006273.1 | + | 139511 | 0.69 | 0.940849 |
Target: 5'- -cUCCGCGUaGCgcuccuggaucuugGCGGCCGAAU-CUCc -3' miRNA: 3'- cuAGGUGCA-CG--------------UGCCGGCUUAaGAGc -5' |
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30056 | 3' | -53.2 | NC_006273.1 | + | 140853 | 0.69 | 0.946625 |
Target: 5'- ----gGCgGUGCGCGGCCGc-UUCUCGg -3' miRNA: 3'- cuaggUG-CACGUGCCGGCuuAAGAGC- -5' |
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30056 | 3' | -53.2 | NC_006273.1 | + | 154785 | 0.68 | 0.974015 |
Target: 5'- gGAUaCCAgG-GCACGGUCGAAcgUUUCGu -3' miRNA: 3'- -CUA-GGUgCaCGUGCCGGCUUa-AGAGC- -5' |
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30056 | 3' | -53.2 | NC_006273.1 | + | 157796 | 0.71 | 0.885424 |
Target: 5'- cGUgCAUGUGCAacCGGCCG--UUCUCGg -3' miRNA: 3'- cUAgGUGCACGU--GCCGGCuuAAGAGC- -5' |
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30056 | 3' | -53.2 | NC_006273.1 | + | 164663 | 0.66 | 0.9894 |
Target: 5'- -cUCCAgCGUGUACGugcucggguGCCGggUacaccaUCUCGa -3' miRNA: 3'- cuAGGU-GCACGUGC---------CGGCuuA------AGAGC- -5' |
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30056 | 3' | -53.2 | NC_006273.1 | + | 167506 | 0.67 | 0.978854 |
Target: 5'- uGAUCCAUGgccGCAgGGCCcgagaucccgGGAUUCUgCGg -3' miRNA: 3'- -CUAGGUGCa--CGUgCCGG----------CUUAAGA-GC- -5' |
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30056 | 3' | -53.2 | NC_006273.1 | + | 178007 | 0.68 | 0.965321 |
Target: 5'- -cUCCAUGUGCGCGcCCGAuUUCa-- -3' miRNA: 3'- cuAGGUGCACGUGCcGGCUuAAGagc -5' |
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30056 | 3' | -53.2 | NC_006273.1 | + | 205277 | 0.67 | 0.984814 |
Target: 5'- --gCCugGcGCucACGGCCGAGUUCg-- -3' miRNA: 3'- cuaGGugCaCG--UGCCGGCUUAAGagc -5' |
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30056 | 3' | -53.2 | NC_006273.1 | + | 212557 | 0.68 | 0.967816 |
Target: 5'- aGAUCCAgGgucucguaauaaGCACGGCCGAAgcggCGg -3' miRNA: 3'- -CUAGGUgCa-----------CGUGCCGGCUUaagaGC- -5' |
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30056 | 3' | -53.2 | NC_006273.1 | + | 213701 | 0.67 | 0.986485 |
Target: 5'- cGGUCCGaguggcgcagguCGUGCACGucggccaccagcGCCGuggUCUCGg -3' miRNA: 3'- -CUAGGU------------GCACGUGC------------CGGCuuaAGAGC- -5' |
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30056 | 3' | -53.2 | NC_006273.1 | + | 222020 | 0.68 | 0.974015 |
Target: 5'- gGGUa-GCGUuuaGCAUGGCCGAAgaCUCGg -3' miRNA: 3'- -CUAggUGCA---CGUGCCGGCUUaaGAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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