Results 1 - 20 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30056 | 3' | -53.2 | NC_006273.1 | + | 36296 | 0.66 | 0.99066 |
Target: 5'- cGGUCCACGg----GGCCGAugcUCUCGu -3' miRNA: 3'- -CUAGGUGCacgugCCGGCUua-AGAGC- -5' |
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30056 | 3' | -53.2 | NC_006273.1 | + | 63175 | 0.68 | 0.971315 |
Target: 5'- cGUCuCGCG-GCGCGGCCGGcgcggcCUCGc -3' miRNA: 3'- cUAG-GUGCaCGUGCCGGCUuaa---GAGC- -5' |
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30056 | 3' | -53.2 | NC_006273.1 | + | 154785 | 0.68 | 0.974015 |
Target: 5'- gGAUaCCAgG-GCACGGUCGAAcgUUUCGu -3' miRNA: 3'- -CUA-GGUgCaCGUGCCGGCUUa-AGAGC- -5' |
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30056 | 3' | -53.2 | NC_006273.1 | + | 73863 | 0.68 | 0.976526 |
Target: 5'- cGUUCGCGUgaGCGCGGCCGAcaug-CGg -3' miRNA: 3'- cUAGGUGCA--CGUGCCGGCUuaagaGC- -5' |
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30056 | 3' | -53.2 | NC_006273.1 | + | 167506 | 0.67 | 0.978854 |
Target: 5'- uGAUCCAUGgccGCAgGGCCcgagaucccgGGAUUCUgCGg -3' miRNA: 3'- -CUAGGUGCa--CGUgCCGG----------CUUAAGA-GC- -5' |
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30056 | 3' | -53.2 | NC_006273.1 | + | 128958 | 0.67 | 0.978854 |
Target: 5'- -uUCCAUG-GCGuCGGCCGuGUUUUUGa -3' miRNA: 3'- cuAGGUGCaCGU-GCCGGCuUAAGAGC- -5' |
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30056 | 3' | -53.2 | NC_006273.1 | + | 16370 | 0.67 | 0.984814 |
Target: 5'- --aCUACGUGC-CGucGCUGGAUUCUCc -3' miRNA: 3'- cuaGGUGCACGuGC--CGGCUUAAGAGc -5' |
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30056 | 3' | -53.2 | NC_006273.1 | + | 120768 | 0.66 | 0.988011 |
Target: 5'- --gCCAgGUGaaCACGGCCGGAUUgUgGa -3' miRNA: 3'- cuaGGUgCAC--GUGCCGGCUUAAgAgC- -5' |
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30056 | 3' | -53.2 | NC_006273.1 | + | 164663 | 0.66 | 0.9894 |
Target: 5'- -cUCCAgCGUGUACGugcucggguGCCGggUacaccaUCUCGa -3' miRNA: 3'- cuAGGU-GCACGUGC---------CGGCuuA------AGAGC- -5' |
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30056 | 3' | -53.2 | NC_006273.1 | + | 212557 | 0.68 | 0.967816 |
Target: 5'- aGAUCCAgGgucucguaauaaGCACGGCCGAAgcggCGg -3' miRNA: 3'- -CUAGGUgCa-----------CGUGCCGGCUUaagaGC- -5' |
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30056 | 3' | -53.2 | NC_006273.1 | + | 140853 | 0.69 | 0.946625 |
Target: 5'- ----gGCgGUGCGCGGCCGc-UUCUCGg -3' miRNA: 3'- cuaggUG-CACGUGCCGGCuuAAGAGC- -5' |
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30056 | 3' | -53.2 | NC_006273.1 | + | 60193 | 0.69 | 0.946194 |
Target: 5'- cAUCCugGUcGCGcCGGCCGGAUUaaaggugCUCa -3' miRNA: 3'- cUAGGugCA-CGU-GCCGGCUUAA-------GAGc -5' |
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30056 | 3' | -53.2 | NC_006273.1 | + | 116421 | 0.74 | 0.761922 |
Target: 5'- cGGUCUACGUGgGCGGCU---UUCUCGc -3' miRNA: 3'- -CUAGGUGCACgUGCCGGcuuAAGAGC- -5' |
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30056 | 3' | -53.2 | NC_006273.1 | + | 52789 | 0.71 | 0.898614 |
Target: 5'- aGUCCACGgaccGCuCGGucuCCGAGUUCUCa -3' miRNA: 3'- cUAGGUGCa---CGuGCC---GGCUUAAGAGc -5' |
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30056 | 3' | -53.2 | NC_006273.1 | + | 9426 | 0.71 | 0.904872 |
Target: 5'- -uUUCACGUGCACGcGCCaAAaUCUCa -3' miRNA: 3'- cuAGGUGCACGUGC-CGGcUUaAGAGc -5' |
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30056 | 3' | -53.2 | NC_006273.1 | + | 120508 | 0.71 | 0.904872 |
Target: 5'- cGUCCuaagcGCGUGCGCGGCgGGuggCUCa -3' miRNA: 3'- cUAGG-----UGCACGUGCCGgCUuaaGAGc -5' |
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30056 | 3' | -53.2 | NC_006273.1 | + | 91042 | 0.71 | 0.910902 |
Target: 5'- --aCCACGUGCACaGUCG---UCUCGg -3' miRNA: 3'- cuaGGUGCACGUGcCGGCuuaAGAGC- -5' |
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30056 | 3' | -53.2 | NC_006273.1 | + | 101954 | 0.7 | 0.932708 |
Target: 5'- --cCCGCGUGCGCGcGCCGucgcgucgCUUGa -3' miRNA: 3'- cuaGGUGCACGUGC-CGGCuuaa----GAGC- -5' |
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30056 | 3' | -53.2 | NC_006273.1 | + | 116308 | 0.7 | 0.937578 |
Target: 5'- --cCCGCG-GgACGGCgGggUUCUCu -3' miRNA: 3'- cuaGGUGCaCgUGCCGgCuuAAGAGc -5' |
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30056 | 3' | -53.2 | NC_006273.1 | + | 139511 | 0.69 | 0.940849 |
Target: 5'- -cUCCGCGUaGCgcuccuggaucuugGCGGCCGAAU-CUCc -3' miRNA: 3'- cuAGGUGCA-CG--------------UGCCGGCUUAaGAGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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