miRNA display CGI


Results 21 - 31 of 31 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30056 3' -53.2 NC_006273.1 + 139511 0.69 0.940849
Target:  5'- -cUCCGCGUaGCgcuccuggaucuugGCGGCCGAAU-CUCc -3'
miRNA:   3'- cuAGGUGCA-CG--------------UGCCGGCUUAaGAGc -5'
30056 3' -53.2 NC_006273.1 + 60193 0.69 0.946194
Target:  5'- cAUCCugGUcGCGcCGGCCGGAUUaaaggugCUCa -3'
miRNA:   3'- cUAGGugCA-CGU-GCCGGCUUAA-------GAGc -5'
30056 3' -53.2 NC_006273.1 + 205277 0.67 0.984814
Target:  5'- --gCCugGcGCucACGGCCGAGUUCg-- -3'
miRNA:   3'- cuaGGugCaCG--UGCCGGCUUAAGagc -5'
30056 3' -53.2 NC_006273.1 + 103457 0.67 0.984814
Target:  5'- uGAUCUugGUGUGCG-CCGugagGUUCUUGc -3'
miRNA:   3'- -CUAGGugCACGUGCcGGCu---UAAGAGC- -5'
30056 3' -53.2 NC_006273.1 + 113520 0.67 0.981006
Target:  5'- cGAUCUAUGUGUACGcGCUGccg-CUCa -3'
miRNA:   3'- -CUAGGUGCACGUGC-CGGCuuaaGAGc -5'
30056 3' -53.2 NC_006273.1 + 222020 0.68 0.974015
Target:  5'- gGGUa-GCGUuuaGCAUGGCCGAAgaCUCGg -3'
miRNA:   3'- -CUAggUGCA---CGUGCCGGCUUaaGAGC- -5'
30056 3' -53.2 NC_006273.1 + 178007 0.68 0.965321
Target:  5'- -cUCCAUGUGCGCGcCCGAuUUCa-- -3'
miRNA:   3'- cuAGGUGCACGUGCcGGCUuAAGagc -5'
30056 3' -53.2 NC_006273.1 + 105273 0.69 0.958498
Target:  5'- cGUCCAgGUGCA-GGCUGAggUCgcgCGg -3'
miRNA:   3'- cUAGGUgCACGUgCCGGCUuaAGa--GC- -5'
30056 3' -53.2 NC_006273.1 + 42770 0.69 0.950806
Target:  5'- --gCCGCGagucgcauucUGCACcGCCGAcgUCUCGu -3'
miRNA:   3'- cuaGGUGC----------ACGUGcCGGCUuaAGAGC- -5'
30056 3' -53.2 NC_006273.1 + 157796 0.71 0.885424
Target:  5'- cGUgCAUGUGCAacCGGCCG--UUCUCGg -3'
miRNA:   3'- cUAgGUGCACGU--GCCGGCuuAAGAGC- -5'
30056 3' -53.2 NC_006273.1 + 213701 0.67 0.986485
Target:  5'- cGGUCCGaguggcgcagguCGUGCACGucggccaccagcGCCGuggUCUCGg -3'
miRNA:   3'- -CUAGGU------------GCACGUGC------------CGGCuuaAGAGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.