miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30056 5' -53.1 NC_006273.1 + 199022 0.66 0.993009
Target:  5'- uGCGGcUGUCgcgcgaccucaggGGCuuCGUGCGCGUGGGg -3'
miRNA:   3'- gUGUU-ACAGaa-----------CCG--GCACGUGCGUCC- -5'
30056 5' -53.1 NC_006273.1 + 53774 0.66 0.992312
Target:  5'- uGCAccGUCUgGGCCGggcaauccugguguUGCGCGCGa- -3'
miRNA:   3'- gUGUuaCAGAaCCGGC--------------ACGUGCGUcc -5'
30056 5' -53.1 NC_006273.1 + 188964 0.66 0.991997
Target:  5'- gGCGGUGuuuUCUUGGUgggcggCGUGCucagguucuuacgcgGCGCGGGu -3'
miRNA:   3'- gUGUUAC---AGAACCG------GCACG---------------UGCGUCC- -5'
30056 5' -53.1 NC_006273.1 + 217384 0.66 0.991997
Target:  5'- gCGCAGUG-CUacggugguucccuggUGGCgcUGCACGUAGGu -3'
miRNA:   3'- -GUGUUACaGA---------------ACCGgcACGUGCGUCC- -5'
30056 5' -53.1 NC_006273.1 + 207114 0.66 0.991561
Target:  5'- aGCAGUGUgCUccagaagGGCaGUGUaucGCGCAGGu -3'
miRNA:   3'- gUGUUACA-GAa------CCGgCACG---UGCGUCC- -5'
30056 5' -53.1 NC_006273.1 + 169918 0.66 0.991561
Target:  5'- -cCAGUGUUUUGGacguCGUGgACGgGGGu -3'
miRNA:   3'- guGUUACAGAACCg---GCACgUGCgUCC- -5'
30056 5' -53.1 NC_006273.1 + 143175 0.66 0.989092
Target:  5'- aCACAGg--UUUGGCgccCGUagGCGCGCGGGu -3'
miRNA:   3'- -GUGUUacaGAACCG---GCA--CGUGCGUCC- -5'
30056 5' -53.1 NC_006273.1 + 47390 0.66 0.989092
Target:  5'- gACGcgGUUgccGGCggagGUGCugGCGGGg -3'
miRNA:   3'- gUGUuaCAGaa-CCGg---CACGugCGUCC- -5'
30056 5' -53.1 NC_006273.1 + 39974 0.66 0.987664
Target:  5'- aCACGGUGUUUcGGCagaUGCACGCcgccGGa -3'
miRNA:   3'- -GUGUUACAGAaCCGgc-ACGUGCGu---CC- -5'
30056 5' -53.1 NC_006273.1 + 1450 0.66 0.987513
Target:  5'- gACGGUGggCgacaaggccGGCCaucccgagggucuGUGCGCGCAGGa -3'
miRNA:   3'- gUGUUACa-Gaa-------CCGG-------------CACGUGCGUCC- -5'
30056 5' -53.1 NC_006273.1 + 196343 0.66 0.987513
Target:  5'- gACGGUGggCgacaaggccGGCCaucccgagggucuGUGCGCGCAGGa -3'
miRNA:   3'- gUGUUACa-Gaa-------CCGG-------------CACGUGCGUCC- -5'
30056 5' -53.1 NC_006273.1 + 170870 0.67 0.984377
Target:  5'- aCAcCGAUGUCga-GCCG-GCGgGCGGGu -3'
miRNA:   3'- -GU-GUUACAGaacCGGCaCGUgCGUCC- -5'
30056 5' -53.1 NC_006273.1 + 156877 0.67 0.984377
Target:  5'- -cCGGUGUCcgGGCgGcGC-CGCAGGg -3'
miRNA:   3'- guGUUACAGaaCCGgCaCGuGCGUCC- -5'
30056 5' -53.1 NC_006273.1 + 94244 0.67 0.980465
Target:  5'- gGCAggGUUccGGCCGUGC-UGCGGu -3'
miRNA:   3'- gUGUuaCAGaaCCGGCACGuGCGUCc -5'
30056 5' -53.1 NC_006273.1 + 80414 0.67 0.980465
Target:  5'- aCACcuUGguggcGGCCGUGCugGCcGGa -3'
miRNA:   3'- -GUGuuACagaa-CCGGCACGugCGuCC- -5'
30056 5' -53.1 NC_006273.1 + 174421 0.67 0.975865
Target:  5'- gCACAcUGgcagacCUUGGUCGacguUGCACGCGGa -3'
miRNA:   3'- -GUGUuACa-----GAACCGGC----ACGUGCGUCc -5'
30056 5' -53.1 NC_006273.1 + 61282 0.68 0.973288
Target:  5'- gCGCGcgGcCgaGGCCGUGUACacgcuuucgaGCAGGc -3'
miRNA:   3'- -GUGUuaCaGaaCCGGCACGUG----------CGUCC- -5'
30056 5' -53.1 NC_006273.1 + 70417 0.68 0.97302
Target:  5'- gGCAuacccguGUGUCUcGG-CGUGCACGUAGc -3'
miRNA:   3'- gUGU-------UACAGAaCCgGCACGUGCGUCc -5'
30056 5' -53.1 NC_006273.1 + 216968 0.68 0.970518
Target:  5'- uCGCGGgccGUCUUGGCCacgGC-CGCAGc -3'
miRNA:   3'- -GUGUUa--CAGAACCGGca-CGuGCGUCc -5'
30056 5' -53.1 NC_006273.1 + 24416 0.68 0.970518
Target:  5'- gGCcGUGg--UGGCCGUGCugGgCuGGg -3'
miRNA:   3'- gUGuUACagaACCGGCACGugC-GuCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.