miRNA display CGI


Results 21 - 40 of 53 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30056 5' -53.1 NC_006273.1 + 24416 0.68 0.970518
Target:  5'- gGCcGUGg--UGGCCGUGCugGgCuGGg -3'
miRNA:   3'- gUGuUACagaACCGGCACGugC-GuCC- -5'
30056 5' -53.1 NC_006273.1 + 158201 0.68 0.970518
Target:  5'- --aGAUGUCgugcaGGUCGUGCagcgugagGCGCGGGc -3'
miRNA:   3'- gugUUACAGaa---CCGGCACG--------UGCGUCC- -5'
30056 5' -53.1 NC_006273.1 + 145552 0.68 0.964372
Target:  5'- gACGggGUUccgggcGGCgGUGCugGCGGGg -3'
miRNA:   3'- gUGUuaCAGaa----CCGgCACGugCGUCC- -5'
30056 5' -53.1 NC_006273.1 + 70417 0.68 0.97302
Target:  5'- gGCAuacccguGUGUCUcGG-CGUGCACGUAGc -3'
miRNA:   3'- gUGU-------UACAGAaCCgGCACGUGCGUCc -5'
30056 5' -53.1 NC_006273.1 + 240 0.68 0.96876
Target:  5'- gGguGUGUUggcgGGCCGUGUcugcguguguccucgACGCGGGu -3'
miRNA:   3'- gUguUACAGaa--CCGGCACG---------------UGCGUCC- -5'
30056 5' -53.1 NC_006273.1 + 41284 0.68 0.960984
Target:  5'- aCACGGUGUUUUGagaaGCCGUGgAaguCGUAGGc -3'
miRNA:   3'- -GUGUUACAGAAC----CGGCACgU---GCGUCC- -5'
30056 5' -53.1 NC_006273.1 + 195133 0.68 0.96876
Target:  5'- gGguGUGUUggcgGGCCGUGUcugcguguguccucgACGCGGGu -3'
miRNA:   3'- gUguUACAGaa--CCGGCACG---------------UGCGUCC- -5'
30056 5' -53.1 NC_006273.1 + 216968 0.68 0.970518
Target:  5'- uCGCGGgccGUCUUGGCCacgGC-CGCAGc -3'
miRNA:   3'- -GUGUUa--CAGAACCGGca-CGuGCGUCc -5'
30056 5' -53.1 NC_006273.1 + 61282 0.68 0.973288
Target:  5'- gCGCGcgGcCgaGGCCGUGUACacgcuuucgaGCAGGc -3'
miRNA:   3'- -GUGUuaCaGaaCCGGCACGUG----------CGUCC- -5'
30056 5' -53.1 NC_006273.1 + 195016 0.69 0.940718
Target:  5'- uCGgGGUGUgUUGGCCGggUGUGuCGCGGGc -3'
miRNA:   3'- -GUgUUACAgAACCGGC--ACGU-GCGUCC- -5'
30056 5' -53.1 NC_006273.1 + 82756 0.69 0.953555
Target:  5'- gCGCAAuuUGUacgcgcGGCCGUGCA-GCGGGc -3'
miRNA:   3'- -GUGUU--ACAgaa---CCGGCACGUgCGUCC- -5'
30056 5' -53.1 NC_006273.1 + 108553 0.69 0.945227
Target:  5'- uGCAGgccUGUCgugaacuguuuUUGGCCGUGCAauuCGUGGGc -3'
miRNA:   3'- gUGUU---ACAG-----------AACCGGCACGU---GCGUCC- -5'
30056 5' -53.1 NC_006273.1 + 234999 0.69 0.940718
Target:  5'- uCGgGGUGUgUUGGCCGggUGUGuCGCGGGc -3'
miRNA:   3'- -GUgUUACAgAACCGGC--ACGU-GCGUCC- -5'
30056 5' -53.1 NC_006273.1 + 234954 0.69 0.940718
Target:  5'- uCGgGGUGUgUUGGCCGggUGUGuCGCGGGc -3'
miRNA:   3'- -GUgUUACAgAACCGGC--ACGU-GCGUCC- -5'
30056 5' -53.1 NC_006273.1 + 168 0.69 0.940718
Target:  5'- uCGgGGUGUgUUGGCCGggUGUGuCGCGGGc -3'
miRNA:   3'- -GUgUUACAgAACCGGC--ACGU-GCGUCC- -5'
30056 5' -53.1 NC_006273.1 + 123 0.69 0.940718
Target:  5'- uCGgGGUGUgUUGGCCGggUGUGuCGCGGGc -3'
miRNA:   3'- -GUgUUACAgAACCGGC--ACGU-GCGUCC- -5'
30056 5' -53.1 NC_006273.1 + 195061 0.69 0.940718
Target:  5'- uCGgGGUGUgUUGGCCGggUGUGuCGCGGGc -3'
miRNA:   3'- -GUgUUACAgAACCGGC--ACGU-GCGUCC- -5'
30056 5' -53.1 NC_006273.1 + 106163 0.69 0.953555
Target:  5'- gCGCAGauaccgGGCgCGUGCACGUAGGc -3'
miRNA:   3'- -GUGUUacagaaCCG-GCACGUGCGUCC- -5'
30056 5' -53.1 NC_006273.1 + 165094 0.7 0.908737
Target:  5'- ---uGUGUCUUGG-CGUcGCACGCGGa -3'
miRNA:   3'- guguUACAGAACCgGCA-CGUGCGUCc -5'
30056 5' -53.1 NC_006273.1 + 71871 0.7 0.925786
Target:  5'- cCACAGUggaGUCgcaGGUgCGUGcCGCGCAGGg -3'
miRNA:   3'- -GUGUUA---CAGaa-CCG-GCAC-GUGCGUCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.