Results 1 - 20 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30056 | 5' | -53.1 | NC_006273.1 | + | 57337 | 1.1 | 0.007636 |
Target: 5'- gCACAAUGUCUUGGCCGUGCACGCAGGc -3' miRNA: 3'- -GUGUUACAGAACCGGCACGUGCGUCC- -5' |
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30056 | 5' | -53.1 | NC_006273.1 | + | 79686 | 0.76 | 0.648487 |
Target: 5'- gGCGAUgGUCaUGGCCGUGCGCGaagugAGGc -3' miRNA: 3'- gUGUUA-CAGaACCGGCACGUGCg----UCC- -5' |
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30056 | 5' | -53.1 | NC_006273.1 | + | 157835 | 0.74 | 0.776214 |
Target: 5'- gCACGAUGUCgUGGUuagcggCGUGCA-GCAGGu -3' miRNA: 3'- -GUGUUACAGaACCG------GCACGUgCGUCC- -5' |
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30056 | 5' | -53.1 | NC_006273.1 | + | 154401 | 0.74 | 0.785401 |
Target: 5'- uGCGAUGUCUcugaccuggUGGCCGUGCccgACGaCAGc -3' miRNA: 3'- gUGUUACAGA---------ACCGGCACG---UGC-GUCc -5' |
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30056 | 5' | -53.1 | NC_006273.1 | + | 216854 | 0.73 | 0.803359 |
Target: 5'- gGCAugugGUCaaaaGGCCGgcagGCGCGCAGGc -3' miRNA: 3'- gUGUua--CAGaa--CCGGCa---CGUGCGUCC- -5' |
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30056 | 5' | -53.1 | NC_006273.1 | + | 80353 | 0.72 | 0.845442 |
Target: 5'- gGCGAguuaGUCUUGGCCaUGCAUaCGGGg -3' miRNA: 3'- gUGUUa---CAGAACCGGcACGUGcGUCC- -5' |
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30056 | 5' | -53.1 | NC_006273.1 | + | 118026 | 0.72 | 0.845442 |
Target: 5'- gACGGUGgaagUGGCgG-GCACGCGGGu -3' miRNA: 3'- gUGUUACaga-ACCGgCaCGUGCGUCC- -5' |
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30056 | 5' | -53.1 | NC_006273.1 | + | 111483 | 0.71 | 0.875725 |
Target: 5'- aUACGAUGUCaUUGGCCGcUGCGaa-GGGa -3' miRNA: 3'- -GUGUUACAG-AACCGGC-ACGUgcgUCC- -5' |
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30056 | 5' | -53.1 | NC_006273.1 | + | 89596 | 0.71 | 0.875725 |
Target: 5'- cCACAAaGUCgcuuuuGCCGUGCGCGCuaaAGGu -3' miRNA: 3'- -GUGUUaCAGaac---CGGCACGUGCG---UCC- -5' |
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30056 | 5' | -53.1 | NC_006273.1 | + | 173723 | 0.71 | 0.896209 |
Target: 5'- cCGCuuUGUCcgUGGcCCGUGCcCGCAGc -3' miRNA: 3'- -GUGuuACAGa-ACC-GGCACGuGCGUCc -5' |
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30056 | 5' | -53.1 | NC_006273.1 | + | 165094 | 0.7 | 0.908737 |
Target: 5'- ---uGUGUCUUGG-CGUcGCACGCGGa -3' miRNA: 3'- guguUACAGAACCgGCA-CGUGCGUCc -5' |
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30056 | 5' | -53.1 | NC_006273.1 | + | 71871 | 0.7 | 0.925786 |
Target: 5'- cCACAGUggaGUCgcaGGUgCGUGcCGCGCAGGg -3' miRNA: 3'- -GUGUUA---CAGaa-CCG-GCAC-GUGCGUCC- -5' |
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30056 | 5' | -53.1 | NC_006273.1 | + | 34598 | 0.7 | 0.930998 |
Target: 5'- cCGCgGAUGUCguacuuGCCGUGCgccguaGCGCAGGc -3' miRNA: 3'- -GUG-UUACAGaac---CGGCACG------UGCGUCC- -5' |
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30056 | 5' | -53.1 | NC_006273.1 | + | 199598 | 0.7 | 0.935975 |
Target: 5'- aACAggGgugCUUGGCCGUGgACuucCAGGg -3' miRNA: 3'- gUGUuaCa--GAACCGGCACgUGc--GUCC- -5' |
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30056 | 5' | -53.1 | NC_006273.1 | + | 169356 | 0.7 | 0.935975 |
Target: 5'- gGCGAUGagCgccgGGCCGUGCugacgucCGUAGGg -3' miRNA: 3'- gUGUUACa-Gaa--CCGGCACGu------GCGUCC- -5' |
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30056 | 5' | -53.1 | NC_006273.1 | + | 123 | 0.69 | 0.940718 |
Target: 5'- uCGgGGUGUgUUGGCCGggUGUGuCGCGGGc -3' miRNA: 3'- -GUgUUACAgAACCGGC--ACGU-GCGUCC- -5' |
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30056 | 5' | -53.1 | NC_006273.1 | + | 168 | 0.69 | 0.940718 |
Target: 5'- uCGgGGUGUgUUGGCCGggUGUGuCGCGGGc -3' miRNA: 3'- -GUgUUACAgAACCGGC--ACGU-GCGUCC- -5' |
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30056 | 5' | -53.1 | NC_006273.1 | + | 234954 | 0.69 | 0.940718 |
Target: 5'- uCGgGGUGUgUUGGCCGggUGUGuCGCGGGc -3' miRNA: 3'- -GUgUUACAgAACCGGC--ACGU-GCGUCC- -5' |
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30056 | 5' | -53.1 | NC_006273.1 | + | 195061 | 0.69 | 0.940718 |
Target: 5'- uCGgGGUGUgUUGGCCGggUGUGuCGCGGGc -3' miRNA: 3'- -GUgUUACAgAACCGGC--ACGU-GCGUCC- -5' |
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30056 | 5' | -53.1 | NC_006273.1 | + | 195016 | 0.69 | 0.940718 |
Target: 5'- uCGgGGUGUgUUGGCCGggUGUGuCGCGGGc -3' miRNA: 3'- -GUgUUACAgAACCGGC--ACGU-GCGUCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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