miRNA display CGI


Results 21 - 40 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30056 5' -53.1 NC_006273.1 + 158201 0.68 0.970518
Target:  5'- --aGAUGUCgugcaGGUCGUGCagcgugagGCGCGGGc -3'
miRNA:   3'- gugUUACAGaa---CCGGCACG--------UGCGUCC- -5'
30056 5' -53.1 NC_006273.1 + 235071 0.68 0.96876
Target:  5'- gGguGUGUUggcgGGCCGUGUcugcguguguccucgACGCGGGu -3'
miRNA:   3'- gUguUACAGaa--CCGGCACG---------------UGCGUCC- -5'
30056 5' -53.1 NC_006273.1 + 240 0.68 0.96876
Target:  5'- gGguGUGUUggcgGGCCGUGUcugcguguguccucgACGCGGGu -3'
miRNA:   3'- gUguUACAGaa--CCGGCACG---------------UGCGUCC- -5'
30056 5' -53.1 NC_006273.1 + 195133 0.68 0.96876
Target:  5'- gGguGUGUUggcgGGCCGUGUcugcguguguccucgACGCGGGu -3'
miRNA:   3'- gUguUACAGaa--CCGGCACG---------------UGCGUCC- -5'
30056 5' -53.1 NC_006273.1 + 178080 0.68 0.967548
Target:  5'- aGCGAgaauucGGCCGUGCACGUGGa -3'
miRNA:   3'- gUGUUacagaaCCGGCACGUGCGUCc -5'
30056 5' -53.1 NC_006273.1 + 145552 0.68 0.964372
Target:  5'- gACGggGUUccgggcGGCgGUGCugGCGGGg -3'
miRNA:   3'- gUGUuaCAGaa----CCGgCACGugCGUCC- -5'
30056 5' -53.1 NC_006273.1 + 185210 0.68 0.960984
Target:  5'- gAUAGUGUCUauaaaGGCCGUGC-CGCc-- -3'
miRNA:   3'- gUGUUACAGAa----CCGGCACGuGCGucc -5'
30056 5' -53.1 NC_006273.1 + 196666 0.68 0.960984
Target:  5'- aACGGUGaaUCUUGGCgUGgcGCACGCAGcGg -3'
miRNA:   3'- gUGUUAC--AGAACCG-GCa-CGUGCGUC-C- -5'
30056 5' -53.1 NC_006273.1 + 41284 0.68 0.960984
Target:  5'- aCACGGUGUUUUGagaaGCCGUGgAaguCGUAGGc -3'
miRNA:   3'- -GUGUUACAGAAC----CGGCACgU---GCGUCC- -5'
30056 5' -53.1 NC_006273.1 + 106163 0.69 0.953555
Target:  5'- gCGCAGauaccgGGCgCGUGCACGUAGGc -3'
miRNA:   3'- -GUGUUacagaaCCG-GCACGUGCGUCC- -5'
30056 5' -53.1 NC_006273.1 + 82756 0.69 0.953555
Target:  5'- gCGCAAuuUGUacgcgcGGCCGUGCA-GCGGGc -3'
miRNA:   3'- -GUGUU--ACAgaa---CCGGCACGUgCGUCC- -5'
30056 5' -53.1 NC_006273.1 + 108553 0.69 0.945227
Target:  5'- uGCAGgccUGUCgugaacuguuuUUGGCCGUGCAauuCGUGGGc -3'
miRNA:   3'- gUGUU---ACAG-----------AACCGGCACGU---GCGUCC- -5'
30056 5' -53.1 NC_006273.1 + 234999 0.69 0.940718
Target:  5'- uCGgGGUGUgUUGGCCGggUGUGuCGCGGGc -3'
miRNA:   3'- -GUgUUACAgAACCGGC--ACGU-GCGUCC- -5'
30056 5' -53.1 NC_006273.1 + 234954 0.69 0.940718
Target:  5'- uCGgGGUGUgUUGGCCGggUGUGuCGCGGGc -3'
miRNA:   3'- -GUgUUACAgAACCGGC--ACGU-GCGUCC- -5'
30056 5' -53.1 NC_006273.1 + 168 0.69 0.940718
Target:  5'- uCGgGGUGUgUUGGCCGggUGUGuCGCGGGc -3'
miRNA:   3'- -GUgUUACAgAACCGGC--ACGU-GCGUCC- -5'
30056 5' -53.1 NC_006273.1 + 123 0.69 0.940718
Target:  5'- uCGgGGUGUgUUGGCCGggUGUGuCGCGGGc -3'
miRNA:   3'- -GUgUUACAgAACCGGC--ACGU-GCGUCC- -5'
30056 5' -53.1 NC_006273.1 + 195016 0.69 0.940718
Target:  5'- uCGgGGUGUgUUGGCCGggUGUGuCGCGGGc -3'
miRNA:   3'- -GUgUUACAgAACCGGC--ACGU-GCGUCC- -5'
30056 5' -53.1 NC_006273.1 + 195061 0.69 0.940718
Target:  5'- uCGgGGUGUgUUGGCCGggUGUGuCGCGGGc -3'
miRNA:   3'- -GUgUUACAgAACCGGC--ACGU-GCGUCC- -5'
30056 5' -53.1 NC_006273.1 + 199598 0.7 0.935975
Target:  5'- aACAggGgugCUUGGCCGUGgACuucCAGGg -3'
miRNA:   3'- gUGUuaCa--GAACCGGCACgUGc--GUCC- -5'
30056 5' -53.1 NC_006273.1 + 169356 0.7 0.935975
Target:  5'- gGCGAUGagCgccgGGCCGUGCugacgucCGUAGGg -3'
miRNA:   3'- gUGUUACa-Gaa--CCGGCACGu------GCGUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.