miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30056 5' -53.1 NC_006273.1 + 123 0.69 0.940718
Target:  5'- uCGgGGUGUgUUGGCCGggUGUGuCGCGGGc -3'
miRNA:   3'- -GUgUUACAgAACCGGC--ACGU-GCGUCC- -5'
30056 5' -53.1 NC_006273.1 + 168 0.69 0.940718
Target:  5'- uCGgGGUGUgUUGGCCGggUGUGuCGCGGGc -3'
miRNA:   3'- -GUgUUACAgAACCGGC--ACGU-GCGUCC- -5'
30056 5' -53.1 NC_006273.1 + 240 0.68 0.96876
Target:  5'- gGguGUGUUggcgGGCCGUGUcugcguguguccucgACGCGGGu -3'
miRNA:   3'- gUguUACAGaa--CCGGCACG---------------UGCGUCC- -5'
30056 5' -53.1 NC_006273.1 + 1450 0.66 0.987513
Target:  5'- gACGGUGggCgacaaggccGGCCaucccgagggucuGUGCGCGCAGGa -3'
miRNA:   3'- gUGUUACa-Gaa-------CCGG-------------CACGUGCGUCC- -5'
30056 5' -53.1 NC_006273.1 + 24416 0.68 0.970518
Target:  5'- gGCcGUGg--UGGCCGUGCugGgCuGGg -3'
miRNA:   3'- gUGuUACagaACCGGCACGugC-GuCC- -5'
30056 5' -53.1 NC_006273.1 + 34598 0.7 0.930998
Target:  5'- cCGCgGAUGUCguacuuGCCGUGCgccguaGCGCAGGc -3'
miRNA:   3'- -GUG-UUACAGaac---CGGCACG------UGCGUCC- -5'
30056 5' -53.1 NC_006273.1 + 39974 0.66 0.987664
Target:  5'- aCACGGUGUUUcGGCagaUGCACGCcgccGGa -3'
miRNA:   3'- -GUGUUACAGAaCCGgc-ACGUGCGu---CC- -5'
30056 5' -53.1 NC_006273.1 + 41284 0.68 0.960984
Target:  5'- aCACGGUGUUUUGagaaGCCGUGgAaguCGUAGGc -3'
miRNA:   3'- -GUGUUACAGAAC----CGGCACgU---GCGUCC- -5'
30056 5' -53.1 NC_006273.1 + 47390 0.66 0.989092
Target:  5'- gACGcgGUUgccGGCggagGUGCugGCGGGg -3'
miRNA:   3'- gUGUuaCAGaa-CCGg---CACGugCGUCC- -5'
30056 5' -53.1 NC_006273.1 + 53774 0.66 0.992312
Target:  5'- uGCAccGUCUgGGCCGggcaauccugguguUGCGCGCGa- -3'
miRNA:   3'- gUGUuaCAGAaCCGGC--------------ACGUGCGUcc -5'
30056 5' -53.1 NC_006273.1 + 57337 1.1 0.007636
Target:  5'- gCACAAUGUCUUGGCCGUGCACGCAGGc -3'
miRNA:   3'- -GUGUUACAGAACCGGCACGUGCGUCC- -5'
30056 5' -53.1 NC_006273.1 + 61282 0.68 0.973288
Target:  5'- gCGCGcgGcCgaGGCCGUGUACacgcuuucgaGCAGGc -3'
miRNA:   3'- -GUGUuaCaGaaCCGGCACGUG----------CGUCC- -5'
30056 5' -53.1 NC_006273.1 + 70417 0.68 0.97302
Target:  5'- gGCAuacccguGUGUCUcGG-CGUGCACGUAGc -3'
miRNA:   3'- gUGU-------UACAGAaCCgGCACGUGCGUCc -5'
30056 5' -53.1 NC_006273.1 + 71871 0.7 0.925786
Target:  5'- cCACAGUggaGUCgcaGGUgCGUGcCGCGCAGGg -3'
miRNA:   3'- -GUGUUA---CAGaa-CCG-GCAC-GUGCGUCC- -5'
30056 5' -53.1 NC_006273.1 + 79686 0.76 0.648487
Target:  5'- gGCGAUgGUCaUGGCCGUGCGCGaagugAGGc -3'
miRNA:   3'- gUGUUA-CAGaACCGGCACGUGCg----UCC- -5'
30056 5' -53.1 NC_006273.1 + 80353 0.72 0.845442
Target:  5'- gGCGAguuaGUCUUGGCCaUGCAUaCGGGg -3'
miRNA:   3'- gUGUUa---CAGAACCGGcACGUGcGUCC- -5'
30056 5' -53.1 NC_006273.1 + 80414 0.67 0.980465
Target:  5'- aCACcuUGguggcGGCCGUGCugGCcGGa -3'
miRNA:   3'- -GUGuuACagaa-CCGGCACGugCGuCC- -5'
30056 5' -53.1 NC_006273.1 + 82756 0.69 0.953555
Target:  5'- gCGCAAuuUGUacgcgcGGCCGUGCA-GCGGGc -3'
miRNA:   3'- -GUGUU--ACAgaa---CCGGCACGUgCGUCC- -5'
30056 5' -53.1 NC_006273.1 + 89596 0.71 0.875725
Target:  5'- cCACAAaGUCgcuuuuGCCGUGCGCGCuaaAGGu -3'
miRNA:   3'- -GUGUUaCAGaac---CGGCACGUGCG---UCC- -5'
30056 5' -53.1 NC_006273.1 + 94244 0.67 0.980465
Target:  5'- gGCAggGUUccGGCCGUGC-UGCGGu -3'
miRNA:   3'- gUGUuaCAGaaCCGGCACGuGCGUCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.